• using R Under development (unstable) (2012-05-22 r59396)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘PwrGSD/DESCRIPTION’ ... OK
• this is package ‘PwrGSD’ version ‘1.16’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘PwrGSD’ can be installed ... [7s/11s] OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File ‘PwrGSD/R/PwrGSD.R’:
  .onAttach calls:
  require(survival)
  message(paste(pkgname, ver))
  
  Package startup functions should not change the search path.
  Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
  See section ‘Good practice’ in ?.onAttach.
  
  AsyPwrGSD: warning in approx(tcut0, h0, tcut.01, meth = "constant", f =
  0, yleft = 0, yright = h0[ncut0]): partial argument match of 'meth'
  to 'method'
  AsyPwrGSD: warning in approx(tcut1, rhaz, tcut.01, meth = "constant", f
  = 0, yleft = 0, yright = rhaz[length(rhaz)]): partial argument match
  of 'meth' to 'method'
  AsyPwrGSD: warning in approx(tcut0, h0, tcut0.new, meth = "const", f =
  0, yleft = 0, yright = h0[ncut0]): partial argument match of 'meth'
  to 'method'
  AsyPwrGSD: warning in approx(tcut1, h1, tcut1.new, meth = "const", f =
  0, yleft = 0, yright = h1[ncut1]): partial argument match of 'meth'
  to 'method'
  costopplot: warning in match.call(expand = FALSE): partial argument
  match of 'expand' to 'expand.dots'
  plot.boundaries: warning in match.call(expand = TRUE): partial argument
  match of 'expand' to 'expand.dots'
  plot.cpd.PwrGSD: warning in match.call(expand = FALSE): partial
  argument match of 'expand' to 'expand.dots'
  stpplt: warning in match.call(expand = FALSE): partial argument match
  of 'expand' to 'expand.dots'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [60s/86s] OK
• checking re-building of vignette PDFs ... [61s/94s] OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/PwrGSD.Rcheck/00check.log’
  for details.