• using R Under development (unstable) (2012-05-22 r59396)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• using option ‘--no-examples’
• checking for file ‘NCBI2R/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘NCBI2R’ version ‘1.3.5’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘NCBI2R’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... WARNING
  Error : .onLoad failed in loadNamespace() for ‘NCBI2R’, details:
  call: read.dcf(file = system.file("DESCRIPTION", package = "NCBI2R"))
  error: cannot open the connection
  In addition: Warning message:
  In read.dcf(file = system.file("DESCRIPTION", package = "NCBI2R")) :
  cannot open compressed file ‘’, probable reason ‘No such file or directory’
  Error: package/namespace load failed for ‘NCBI2R’
  Execution halted
  
  It looks like this package has a loading problem when not on .libPaths:
  see the messages for details.
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  pn : pn.int: warning in scan(myurl, what = "character", sep = "\n",
  nline = 1, quiet = TRUE): partial argument match of 'nline' to
  'nlines'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... SKIPPED
• checking PDF version of manual ... OK
  WARNING: There was 1 warning.
  NOTE: There was 1 note.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/NCBI2R.Rcheck/00check.log’
  for details.