• using R Under development (unstable) (2012-05-22 r59396)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘Matrix/DESCRIPTION’ ... OK
• this is package ‘Matrix’ version ‘1.0-6’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘Matrix’ can be installed ... [98s/141s] OK
• checking installed package size ... NOTE
  installed size is 6.0Mb
  sub-directories of 1Mb or more:
  doc 1.4Mb
  libs 2.4Mb
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [36s/51s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [255s/355s] OK
  Running ‘Class+Meth.R’ [41s/56s]
  Running ‘Simple.R’ [53s/71s]
  Running ‘abIndex-tsts.R’
  Running ‘base-matrix-fun.R’
  Running ‘bind.R’
  Comparing ‘bind.Rout’ to ‘bind.Rout.save’ ... OK
  Running ‘dg_Matrix.R’
  Running ‘dpo-test.R’ [25s/34s]
  Running ‘dtpMatrix.R’
  Running ‘factorizing.R’ [20s/28s]
  Running ‘group-methods.R’ [15s/21s]
  Running ‘indexing.R’ [49s/70s]
  Comparing ‘indexing.Rout’ to ‘indexing.Rout.save’ ... OK
  Running ‘matprod.R’
  Running ‘matr-exp.R’
  Running ‘other-pkgs.R’
  Running ‘spModel.matrix.R’
  Running ‘validObj.R’
  Running ‘write-read.R’
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [48s/66s] OK
• checking re-building of vignette PDFs ... [53s/92s] OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/Matrix.Rcheck/00check.log’
  for details.