• using R Under development (unstable) (2012-05-22 r59396)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘MSBVAR/DESCRIPTION’ ... OK
• this is package ‘MSBVAR’ version ‘0.6-0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘MSBVAR’ can be installed ... [23s/26s] OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File ‘MSBVAR/R/zzz.R’:
  .onAttach calls:
  cat("##\n## MSBVAR Package v.0.6-0\n")
  cat("## 2011-01-31\n")
  cat("## Copyright (C) 2005-", yr, ", Patrick T. Brandt\n", sep = "")
  cat("## Written by Patrick T. Brandt\n")
  cat("##\n## Support provided by the U.S. National Science Foundation\n")
  cat("## (Grants SES-0351179, SES-0351205, SES-0540816, and SES-0921051)\n##\n")
  require(KernSmooth, quietly = TRUE)
  require(xtable, quietly = TRUE)
  require(coda, quietly = TRUE)
  require(bit, quietly = TRUE)
  require(mvtnorm, quietly = TRUE)
  require(lattice, quietly = TRUE)
  
  Package startup functions should not change the search path.
  Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
  See section ‘Good practice’ in ?.onAttach.
  
  plot.gibbs.A0: warning in close.screen(all = TRUE): partial argument
  match of 'all' to 'all.screens'
  plot.irf.VAR: warning in ts(t(impulses), start = c(0, 1), freq = 1):
  partial argument match of 'freq' to 'frequency'
  plotregimeid: warning in kmeans(intercepts, center = h, nstart = 10):
  partial argument match of 'center' to 'centers'
  plotregimeid: warning in kmeans(Sigmaout, center = h, nstart = 10):
  partial argument match of 'center' to 'centers'
  plotregimeid: warning in kmeans(Q, center = h, nstart = 10): partial
  argument match of 'center' to 'centers'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE
  S3 methods shown with full name in documentation object 'mean.SS':
  ‘mean.SS’ ‘sum.SS’ ‘plot.SS’
  
  S3 methods shown with full name in documentation object 'plot.forc.ecdf':
  ‘plot.forc.ecdf’
  
  S3 methods shown with full name in documentation object 'plot.forecast':
  ‘plot.forecast’
  
  S3 methods shown with full name in documentation object 'plot.gibbs.A0':
  ‘plot.gibbs.A0’
  
  S3 methods shown with full name in documentation object 'plot.irf':
  ‘plot.irf’
  
  S3 methods shown with full name in documentation object 'plot.mc.irf':
  ‘plot.mc.irf’
  
  S3 methods shown with full name in documentation object 'print.dfev':
  ‘print.dfev’ ‘summary.dfev’
  
  S3 methods shown with full name in documentation object 'print.posterior.fit':
  ‘print.posterior.fit’
  
  S3 methods shown with full name in documentation object 'summary.forecast':
  ‘summary.forecast’
  
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See the chapter ‘Writing R documentation files’ in the ‘Writing R
  Extensions’ manual.
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... WARNING
  File ‘/data/gannet/tmp/ripley/R/packages/tests-devel/MSBVAR.Rcheck/MSBVAR/libs/MSBVAR.so’:
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
  Objects: ‘myexcept.o’, ‘newmatnl.o’
  Found ‘exit’, possibly from ‘exit’ (C)
  Object: ‘myexcept.o’
  
  Compiled code should not call functions which might terminate R nor
  write to stdout/stderr instead of to the console.
  
  See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
• checking examples ... [10s/16s] OK
• checking PDF version of manual ... OK
  WARNING: There was 1 warning.
  NOTE: There were 2 notes.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/MSBVAR.Rcheck/00check.log’
  for details.