• using R Under development (unstable) (2012-05-22 r59396)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘Bolstad2/DESCRIPTION’ ... OK
• this is package ‘Bolstad2’ version ‘1.0-27’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘Bolstad2’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  BayesCPH : calcMatchedCurvatureNormLike: warning in matrix(0, nr =
  nObs, nc = nObs): partial argument match of 'nr' to 'nrow'
  BayesCPH : calcMatchedCurvatureNormLike: warning in matrix(0, nr =
  nObs, nc = nObs): partial argument match of 'nc' to 'ncol'
  BayesCPH : normApproxPosterior: warning in matrix(0, nc = nParameters,
  nr = nParameters): partial argument match of 'nr' to 'nrow'
  BayesCPH : normApproxPosterior: warning in matrix(0, nc = nParameters,
  nr = nParameters): partial argument match of 'nc' to 'ncol'
  BayesCPH: warning in matrix(rt(steps * nParameters, df = 4), nc =
  nParameters): partial argument match of 'nc' to 'ncol'
  BayesCPH: warning in matrix(rep(postMean, rep(steps, nParameters)), nc
  = nParameters): partial argument match of 'nc' to 'ncol'
  BayesLogistic : calcMatchedCurvatureNormLike: warning in matrix(0, nr =
  nObs, nc = nObs): partial argument match of 'nr' to 'nrow'
  BayesLogistic : calcMatchedCurvatureNormLike: warning in matrix(0, nr =
  nObs, nc = nObs): partial argument match of 'nc' to 'ncol'
  BayesLogistic : normApproxPosterior: warning in matrix(0, nc =
  nParameters, nr = nParameters): partial argument match of 'nr' to
  'nrow'
  BayesLogistic : normApproxPosterior: warning in matrix(0, nc =
  nParameters, nr = nParameters): partial argument match of 'nc' to
  'ncol'
  BayesLogistic: warning in matrix(rt(steps * nParameters, df = 4), nc =
  nParameters): partial argument match of 'nc' to 'ncol'
  BayesLogistic: warning in matrix(rep(postMean, rep(steps,
  nParameters)), nc = nParameters): partial argument match of 'nc' to
  'ncol'
  BayesPois : calcMatchedCurvatureNormLike: warning in matrix(0, nr =
  nObs, nc = nObs): partial argument match of 'nr' to 'nrow'
  BayesPois : calcMatchedCurvatureNormLike: warning in matrix(0, nr =
  nObs, nc = nObs): partial argument match of 'nc' to 'ncol'
  BayesPois : normApproxPosterior: warning in matrix(0, nc = nParameters,
  nr = nParameters): partial argument match of 'nr' to 'nrow'
  BayesPois : normApproxPosterior: warning in matrix(0, nc = nParameters,
  nr = nParameters): partial argument match of 'nc' to 'ncol'
  BayesPois: warning in matrix(rt(steps * nParameters, df = 4), nc =
  nParameters): partial argument match of 'nc' to 'ncol'
  BayesPois: warning in matrix(rep(postMean, rep(steps, nParameters)), nc
  = nParameters): partial argument match of 'nc' to 'ncol'
  bivnormMH: warning in matrix(0, nc = 2, nr = steps): partial argument
  match of 'nr' to 'nrow'
  bivnormMH: warning in matrix(0, nc = 2, nr = steps): partial argument
  match of 'nc' to 'ncol'
  bivnormMH: warning in matrix(rnorm(2 * steps, rep(0, 2 * steps),
  rep(sigma, steps)), nc = 2): partial argument match of 'nc' to 'ncol'
  bivnormMH: warning in matrix(0, nc = 2, nr = twosteps): partial
  argument match of 'nr' to 'nrow'
  bivnormMH: warning in matrix(0, nc = 2, nr = twosteps): partial
  argument match of 'nc' to 'ncol'
  hierMeanReg: warning in matrix(0, nc = nCovariates, nr = steps):
  partial argument match of 'nr' to 'nrow'
  hierMeanReg: warning in matrix(0, nc = nCovariates, nr = steps):
  partial argument match of 'nc' to 'ncol'
  hierMeanReg: warning in matrix(rnorm(nCovariates * steps), nc =
  nCovariates): partial argument match of 'nc' to 'ncol'
  hierMeanReg: warning in matrix(0, nc = nGroups, nr = steps): partial
  argument match of 'nr' to 'nrow'
  hierMeanReg: warning in matrix(0, nc = nGroups, nr = steps): partial
  argument match of 'nc' to 'ncol'
  hierMeanReg: warning in matrix(rnorm(nGroups * steps), nc = nGroups):
  partial argument match of 'nc' to 'ncol'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [12s/19s] OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/Bolstad2.Rcheck/00check.log’
  for details.