• using R Under development (unstable) (2012-05-22 r59396)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘BaM/DESCRIPTION’ ... OK
• this is package ‘BaM’ version ‘0.99’
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... WARNING
  As from R 2.14.0 all packages need a namespace.
  One will be generated on installation, but it is better to handcraft a
  NAMESPACE file: R CMD build will produce a suitable starting point.
  CRAN requires a NAMESPACE file for all submissions.
• checking for executable files ... OK
• checking whether package ‘BaM’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  biv.norm.post: possible error in rwishart(alpha + n, SqrtSigma =
  chol(solve(Wp.inv))): unused argument(s) (SqrtSigma =
  chol(solve(Wp.inv)))
  biv.norm.post: no visible global function definition for ‘rmultinorm’
  mhplot.walk.MH: possible error in mhplot(walk.mat[1, 1], walk.mat[1,
  2], type = "n", xlim = round(range(walk.mat[, 1]) * 1.2), ylim =
  round(range(walk.mat[, 2]) * 1.2), xlab = "", ylab = ""): unused
  argument(s) (walk.mat[1, 2], type = "n", xlim =
  round(range(walk.mat[, 1]) * 1.2), ylim = round(range(walk.mat[, 2])
  * 1.2), xlab = "", ylab = "")
  sir: no visible binding for global variable ‘normal.posterior.ll’
  sir: no visible binding for global variable ‘t.posterior.ll’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... OK
• checking PDF version of manual ... OK
  WARNING: There was 1 warning.
  NOTE: There was 1 note.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/BaM.Rcheck/00check.log’
  for details.