• using R Under development (unstable) (2012-05-22 r59396)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘BRugs/DESCRIPTION’ ... OK
• this is package ‘BRugs’ version ‘0.7-5’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘BRugs’ can be installed ... [4s/11s] OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... WARNING
  Found .Internal call in the following function:
  ‘modelSetWD’
  with calls to .Internal functions
  ‘setwd’
  
  Packages should not call .Internal(): it is not part of the API, for
  use only by R itself and subject to change without notice.
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [70s/134s] OK
  Running ‘BRugs.R’ [5s/11s]
  Comparing ‘BRugs.Rout’ to ‘BRugs.Rout.save’ ... OK
  Running ‘examples.R’ [34s/63s]
  Comparing ‘examples.Rout’ to ‘examples.Rout.save’ ...163c163
  < 20000 updates took 1 s
  ---
  > 20000 updates took 0 s
  Running ‘examples.stats.R’
  Running ‘functions.R’ [29s/58s]
  Comparing ‘functions.Rout’ to ‘functions.Rout.save’ ... OK
  Running ‘local.R’
• checking PDF version of manual ... OK
  WARNING: There was 1 warning.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/BRugs.Rcheck/00check.log’
  for details.