• using R Under development (unstable) (2012-08-14 r60253)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘AlgDesign/DESCRIPTION’ ... OK
• this is package ‘AlgDesign’ version ‘1.1-7’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking whether package ‘AlgDesign’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  expand.formula : nameargs : <anonymous>: warning in deparse(x, width =
  500): partial argument match of 'width' to 'width.cutoff'
  expand.formula : quad: warning in gsub(ag, repl = nms[i], strg):
  partial argument match of 'repl' to 'replacement'
  expand.formula : cubic: warning in gsub(ag, repl = nms[i], strg):
  partial argument match of 'repl' to 'replacement'
  expand.formula : cubicS: warning in gsub(ag, repl = nms[i], strg):
  partial argument match of 'repl' to 'replacement'
  expand.formula: warning in deparse(frml, width = 500): partial argument
  match of 'width' to 'width.cutoff'
  optFederov: warning in expand.formula(frml, colnames(data), numeric =
  numericColumn): partial argument match of 'numeric' to 'numerics'
  optMonteCarlo : randNullify: warning in sort(apply(rc * rc, 1, sum),
  dec = TRUE, ind = TRUE): partial argument match of 'dec' to
  'decreasing'
  optMonteCarlo : randNullify: warning in sort(diag(t(expcand) %*%
  (expcand - expdes %*% qr.coef(aa, expcand))), dec = TRUE, ind =
  TRUE): partial argument match of 'dec' to 'decreasing'
  optMonteCarlo : getCenteredDesign: warning in sort(d, dec = TRUE, ind =
  TRUE): partial argument match of 'dec' to 'decreasing'
  optMonteCarlo : getCenteredDesign: warning in optFederov(frml, cand,
  nTrials = nT, approximate = approximate, rows = rows, crit =
  criterion, eval = evaluateI, space = space, DFrac = DFrac, CFrac =
  CFrac): partial argument match of 'crit' to 'criterion'
  optMonteCarlo : getCenteredDesign: warning in optFederov(frml, cand,
  nTrials = nT, approximate = approximate, rows = rows, crit =
  criterion, eval = evaluateI, space = space, DFrac = DFrac, CFrac =
  CFrac): partial argument match of 'eval' to 'evaluateI'
  optMonteCarlo: warning in deparse(frml, width = 500): partial argument
  match of 'width' to 'width.cutoff'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE
  S3 methods shown with full name in documentation object 'model.matrix.formula':
  ‘model.matrix.formula’
  
  S3 methods shown with full name in documentation object 'model.matrix.terms':
  ‘model.matrix.terms’
  
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See the chapter ‘Writing R documentation files’ in the ‘Writing R
  Extensions’ manual.
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... OK
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  ‘/data/blackswan/ripley/R/packages/tests-devel/AlgDesign.Rcheck/00check.log’
  for details.