• using R Under development (unstable) (2012-05-22 r59396)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘AMA/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘AMA’ version ‘1.0.8’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘AMA’ can be installed ... [10s/16s] OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... WARNING
  Found the following sources/headers with CR or CRLF line endings:
  src/ARPACK/second.f
  src/notLAPACK/second.f
  Some Unix compilers require LF line endings.
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... NOTE
  File ‘/data/gannet/tmp/ripley/R/packages/tests-devel/AMA.Rcheck/AMA/libs/AMA.so’:
  Found ‘_gfortran_st_write’, possibly from ‘write’ (Fortran), ‘print’
  (Fortran)
  Objects: ‘dmout.o’, ‘dnaupd.o’, ‘dvout.o’, ‘ivout.o’, ‘ma50ad.o’
  Found ‘printf’, possibly from ‘printf’ (C)
  Object: ‘sparseAim.o’
  Found ‘puts’, possibly from ‘printf’ (C), ‘puts’ (C)
  Object: ‘sparseAim.o’
  Found ‘stdout’, possibly from ‘stdout’ (C)
  Objects: ‘callSparseAim.o’, ‘sparseAim.o’
  
  Compiled code should not call functions which might terminate R nor
  write to stdout/stderr instead of to the console.
  
  See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
• checking examples ... OK
• checking PDF version of manual ... OK
  WARNING: There was 1 warning.
  NOTE: There was 1 note.
  See
  ‘/data/gannet/tmp/ripley/R/packages/tests-devel/AMA.Rcheck/00check.log’
  for details.