• using R Under development (unstable) (2012-05-19 r59366)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘spatgraphs/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘spatgraphs’ version ‘2.60’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘spatgraphs’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... ERROR
  Running examples in ‘spatgraphs-Ex.R’ failed
  The error most likely occurred in:
  
  > ### Name: spatgraphs-package
  > ### Title: Graphs for spatial point patterns
  > ### Aliases: spatgraphs-package spatgraphs
  > ### Keywords: spatial
  >
  > ### ** Examples
  >
  > graph_example2d<-function(n=50,k=2,R=0.2)
  + {
  + pp2d<-list(x=runif(n),y=runif(n),n=n,window=list(x=c(0,1),y=c(0,1)))
  + e1<-spatgraph(pp2d,"geometric",par=R)
  + e2<-spatgraph(pp2d,"knn",par=k)
  + e3<-spatgraph(pp2d,"MST")
  + A<-spatcluster(e2)
  + par(mfrow=c(1,3))
  + plot(pp2d,main=paste("Geometric,R =",R))
  + plot(e1,pp2d)
  + plot(pp2d,main=paste("k-nn, k =",k))
  + plot(e2,pp2d)
  + plot(A,pp2d,pch=19)
  + plot(pp2d, main="Minimum spanning tree")
  + plot(e3,pp2d)
  + }
  > graph_example2d()
  >
  > ## Not run:
  > ## 3d example, requires library rgl
  > library(rgl)
  Warning in rgl.init(initValue) : RGL: GLX extension missing on server
  Warning in fun(libname, pkgname) : error in rgl_init
  > graph_example3d<-function(n=200)
  + {
  + w<-c(0,1)
  + phi<-runif(n,0,pi);tau<-runif(n,0,2*pi);r<-runif(n)^0.33
  + pp3d<-list(x=r*sin(tau)*cos(phi),y=r*cos(phi)*cos(tau),z=r*cos(phi),n=n,window=list(x=w,y=w,z=w))
  + e<-spatgraph(pp3d,"RST",par=c(x=0,y=0,z=0))
  + plot3d(pp3d,size=2, main="Radial spanning tree",col="black")
  + plot(e,pp3d,col="plum")
  + }
  > graph_example3d()
  Error in rgl.cur() : rgl_dev_getcurrent
  Calls: graph_example3d ... plot3d -> plot3d.default -> clear3d -> .check3d -> rgl.cur
  Execution halted