Check results for 'rconifers'

using R Under development (unstable) (2012-08-11 r60235)
using platform: x86_64-unknown-linux-gnu (64-bit)
using session charset: UTF-8
checking for file ‘rconifers/DESCRIPTION’ ... OK
this is package ‘rconifers’ version ‘1.0.7’
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking whether package ‘rconifers’ can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking loading without being on the library search path ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... OK
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking compiled code ... OK
checking examples ... [3s/3s] OK
checking differences from ‘rconifers-Ex.Rout’ to ‘rconifers-Ex.Rout.save’ ...
0a1
> > options(pager = "console")
555,556c556,557
< 1 1 PP 4.80 2.91 11.50 0.852 1 100.00 7.5500 0
< 2 1 DF 2.08 0.61 7.08 0.845 1 100.00 4.4000 0
---
> 1 1 DF 2.08 0.61 7.08 0.845 1 100.00 4.4000 0
> 2 1 PP 4.80 2.91 11.50 0.852 1 100.00 7.5500 0
2291c2292
< max sdi = 402.3
---
> max sdi = 400.8
2293,2299c2294,2300
< CEIN 0.000 8.891 0.000 250.0 250.0
< COCO 0.000 10.546 0.000 825.0 825.0
< DF 3.293 28.095 25.132 425.0 425.0
< IC 1.210 7.571 1.797 225.0 500.0
< PM 5.042 33.800 90.114 650.0 650.0
< PP 9.870 37.779 53.129 100.0 100.0
< WF 2.072 6.895 5.286 225.7 275.7
---
> CEIN 0.000 8.830 0.000 250.0 250.0
> COCO 0.000 10.524 0.000 825.0 825.0
> DF 3.555 29.436 29.298 425.0 425.0
> IC 0.997 8.105 1.491 275.0 500.0
> PM 4.977 34.038 87.805 650.0 650.0
> PP 10.577 41.186 61.015 100.0 100.0
> WF 2.087 7.601 5.362 225.7 275.7
2309c2310
< max sdi = 402.3
---
> max sdi = 400.8
2311,2317c2312,2318
< CEIN 0.000 8.891 0.000 250.0 250.0
< COCO 0.000 10.546 0.000 825.0 825.0
< DF 3.293 28.095 25.132 425.0 425.0
< IC 1.210 7.571 1.797 225.0 500.0
< PM 5.042 33.800 90.114 650.0 650.0
< PP 9.870 37.779 53.129 100.0 100.0
< WF 2.072 6.895 5.286 225.7 275.7
---
> CEIN 0.000 8.830 0.000 250.0 250.0
> COCO 0.000 10.524 0.000 825.0 825.0
> DF 3.555 29.436 29.298 425.0 425.0
> IC 0.997 8.105 1.491 275.0 500.0
> PM 4.977 34.038 87.805 650.0 650.0
> PP 10.577 41.186 61.015 100.0 100.0
> WF 2.087 7.601 5.362 225.7 275.7
2752c2753
< max sdi = 398.8
---
> max sdi = 398.6
2754,2760c2755,2761
< CEIN 0.000 8.754 0.0000 250.0 250.0
< COCO 0.000 10.607 0.0000 825.0 825.0
< DF 3.133 27.761 22.7567 425.0 425.0
< IC 1.059 6.102 0.9174 150.0 500.0
< PM 5.021 33.929 89.3666 650.0 650.0
< PP 10.524 40.061 60.4072 100.0 100.0
< WF 2.531 5.420 5.2677 150.7 275.7
---
> CEIN 0.000 8.736 0.0000 250.0 250.0
> COCO 0.000 10.610 0.0000 825.0 825.0
> DF 3.123 27.847 22.6072 425.0 425.0
> IC 1.021 6.046 0.8536 150.0 500.0
> PM 5.019 33.925 89.3221 650.0 650.0
> PP 10.554 40.103 60.7530 100.0 100.0
> WF 2.529 5.417 5.2581 150.7 275.7
2774c2775
< max sdi = 392.6
---
> max sdi = 392.4
2776,2782c2777,2783
< CEIN 0.000 8.754 0.0000 250.00 250.00
< COCO 0.000 10.607 0.0000 825.00 825.00
< DF 6.049 41.988 10.1687 50.96 50.96
< IC 1.059 6.102 0.9174 150.00 500.00
< PM 5.021 33.929 89.3666 650.00 650.00
< PP 10.524 40.061 60.4072 100.00 100.00
< WF 2.531 5.420 5.2677 150.74 275.74
---
> CEIN 0.000 8.736 0.0000 250.00 250.00
> COCO 0.000 10.610 0.0000 825.00 825.00
> DF 6.029 41.907 10.1032 50.96 50.96
> IC 1.021 6.046 0.8536 150.00 500.00
> PM 5.019 33.925 89.3221 650.00 650.00
> PP 10.554 40.103 60.7530 100.00 100.00
> WF 2.529 5.417 5.2581 150.74 275.74
2794c2795
< max sdi = 390.1
---
> max sdi = 390
2796,2802c2797,2803
< CEIN 0.000 8.754 0.00000 250.000 250.000
< COCO 0.000 10.607 0.00000 825.000 825.000
< DF 6.192 43.531 3.18318 15.223 15.223
< IC 1.247 11.935 0.06525 7.694 11.764
< PM 4.848 33.732 2.05878 16.061 16.061
< PP 11.224 42.679 8.88459 12.931 12.931
< WF 3.773 6.613 0.35957 4.631 6.085
---
> CEIN 0.000 8.736 0.00000 250.000 250.000
> COCO 0.000 10.610 0.00000 825.000 825.000
> DF 6.203 43.671 3.19440 15.223 15.223
> IC 1.203 11.772 0.06071 7.694 11.764
> PM 4.841 33.714 2.05294 16.061 16.061
> PP 11.235 42.745 8.90282 12.931 12.931
> WF 3.773 6.689 0.35952 4.631 6.085
2814c2815
< max sdi = 380.6
---
> max sdi = 380.3
2816,2817c2817,2818
< CEIN 0.000 8.754 0.000 250.00 250.00
< COCO 0.000 10.607 0.000 825.00 825.00
---
> CEIN 0.00 8.736 0.000 250.00 250.00
> COCO 0.00 10.610 0.000 825.00 825.00
2820,2822c2821,2823
< PM 5.451 35.205 12.153 75.00 75.00
< PP 11.634 43.568 28.230 38.24 38.24
< WF 35.200 78.068 5.001 0.74 0.74
---
> PM 5.45 35.205 12.152 75.00 75.00
> PP 11.73 44.270 28.686 38.24 38.24
> WF 35.20 78.078 5.001 0.74 0.74
2835c2836
< max sdi = 392.4
---
> max sdi = 392.1
2837,2843c2838,2844
< CEIN 0.000 8.754 0.0000 250.0 250.0
< COCO 0.000 10.607 0.0000 825.0 825.0
< DF 3.133 27.761 22.7567 425.0 425.0
< IC 1.059 6.102 0.9174 150.0 500.0
< PM 5.209 34.656 16.6499 112.5 112.5
< PP 10.524 40.061 60.4072 100.0 100.0
< WF 2.531 5.420 5.2677 150.7 275.7
---
> CEIN 0.000 8.736 0.0000 250.0 250.0
> COCO 0.000 10.610 0.0000 825.0 825.0
> DF 3.123 27.847 22.6072 425.0 425.0
> IC 1.021 6.046 0.8536 150.0 500.0
> PM 5.205 34.645 16.6250 112.5 112.5
> PP 10.554 40.103 60.7530 100.0 100.0
> WF 2.529 5.417 5.2581 150.7 275.7
3319c3320
< unable to project, return_code = 1, 6.894156, check conifers.h for list of return codes
---
> unable to project, return_code = 1, 6.895566, check conifers.h for list of return codes
3329,3330c3330,3331
< x0 = 6.894
< max sdi = 398.8
---
> x0 = 6.896
> max sdi = 398.9
3332,3338c3333,3339
< CEIN 0.000 8.749 0.0000 250.0 250.0
< COCO 0.000 10.611 0.0000 825.0 825.0
< DF 3.141 27.935 22.8727 425.0 425.0
< IC 1.024 6.120 0.8577 150.0 500.0
< PM 5.024 33.935 89.4787 650.0 650.0
< PP 10.544 40.292 60.6383 100.0 100.0
< WF 2.532 5.396 5.2711 150.7 275.7
---
> CEIN 0.000 8.766 0.0000 250.0 250.0
> COCO 0.000 10.605 0.0000 825.0 825.0
> DF 3.156 28.050 23.0834 425.0 425.0
> IC 1.050 6.066 0.9017 150.0 500.0
> PM 5.021 33.929 89.3632 650.0 650.0
> PP 10.535 40.132 60.5358 100.0 100.0
> WF 2.531 5.470 5.2668 150.7 275.7
3351,3352c3352,3353
< x0 = 6.894
< max sdi = 392.5
---
> x0 = 6.896
> max sdi = 392.6
3354,3360c3355,3361
< CEIN 0.000 8.749 0.0000 250.00 250.00
< COCO 0.000 10.611 0.0000 825.00 825.00
< DF 6.044 42.326 10.1546 50.96 50.96
< IC 1.024 6.120 0.8577 150.00 500.00
< PM 5.024 33.935 89.4787 650.00 650.00
< PP 10.544 40.292 60.6383 100.00 100.00
< WF 2.532 5.396 5.2711 150.74 275.74
---
> CEIN 0.000 8.766 0.0000 250.00 250.00
> COCO 0.000 10.605 0.0000 825.00 825.00
> DF 6.088 42.485 10.3011 50.96 50.96
> IC 1.050 6.066 0.9017 150.00 500.00
> PM 5.021 33.929 89.3632 650.00 650.00
> PP 10.535 40.132 60.5358 100.00 100.00
> WF 2.531 5.470 5.2668 150.74 275.74
3372,3373c3373,3374
< x0 = 6.894
< max sdi = 389.8
---
> x0 = 6.896
> max sdi = 390
3375,3381c3376,3382
< CEIN 0.000 8.749 0.0000 250.000 250.000
< COCO 0.000 10.611 0.0000 825.000 825.000
< DF 6.169 43.609 3.1597 15.223 15.223
< IC 1.206 11.998 0.0610 7.694 11.764
< PM 4.869 33.774 2.0764 16.061 16.061
< PP 11.260 42.987 8.9415 12.931 12.931
< WF 3.772 6.472 0.3594 4.631 6.085
---
> CEIN 0.000 8.766 0.00000 250.000 250.000
> COCO 0.000 10.605 0.00000 825.000 825.000
> DF 6.221 43.902 3.21291 15.223 15.223
> IC 1.236 11.823 0.06413 7.694 11.764
> PM 4.848 33.731 2.05880 16.061 16.061
> PP 11.266 43.046 8.95181 12.931 12.931
> WF 3.777 6.977 0.36037 4.631 6.085
3393,3394c3394,3395
< x0 = 6.894
< max sdi = 380.5
---
> x0 = 6.896
> max sdi = 380.4
3396,3397c3397,3398
< CEIN 0.00 8.749 0.000 250.00 250.00
< COCO 0.00 10.611 0.000 825.00 825.00
---
> CEIN 0.000 8.766 0.000 250.00 250.00
> COCO 0.000 10.605 0.000 825.00 825.00
3400,3402c3401,3403
< PM 5.45 35.205 12.150 75.00 75.00
< PP 11.67 43.903 28.415 38.24 38.24
< WF 35.20 78.077 5.001 0.74 0.74
---
> PM 5.451 35.205 12.154 75.00 75.00
> PP 11.687 44.129 28.487 38.24 38.24
> WF 35.200 78.069 5.001 0.74 0.74
3413,3414c3414,3415
< x0 = 6.894
< max sdi = 392.4
---
> x0 = 6.896
> max sdi = 392.5
3416,3422c3417,3423
< CEIN 0.000 8.749 0.0000 250.0 250.0
< COCO 0.000 10.611 0.0000 825.0 825.0
< DF 3.141 27.935 22.8727 425.0 425.0
< IC 1.024 6.120 0.8577 150.0 500.0
< PM 5.220 34.681 16.7191 112.5 112.5
< PP 10.544 40.292 60.6383 100.0 100.0
< WF 2.532 5.396 5.2711 150.7 275.7
---
> CEIN 0.000 8.766 0.0000 250.0 250.0
> COCO 0.000 10.605 0.0000 825.0 825.0
> DF 3.156 28.050 23.0834 425.0 425.0
> IC 1.050 6.066 0.9017 150.0 500.0
> PM 5.209 34.655 16.6510 112.5 112.5
> PP 10.535 40.132 60.5358 100.0 100.0
> WF 2.531 5.470 5.2668 150.7 275.7
3427,3433c3428,3434
< CEIN 0.00000 0.00000 0.00 0.0 0.0
< COCO 0.00000 0.00000 0.00 0.0 0.0
< DF 0.00000 0.00000 0.00 0.0 0.0
< IC 0.00000 0.00000 0.00 0.0 0.0
< PM 0.19607 0.74526 -72.76 -537.5 -537.5
< PP 0.00000 0.00000 0.00 0.0 0.0
< WF 0.00000 0.00000 0.00 0.0 0.0
---
> CEIN 0.00000 0.00000 0.000 0.0 0.0
> COCO 0.00000 0.00000 0.000 0.0 0.0
> DF 0.00000 0.00000 0.000 0.0 0.0
> IC 0.00000 0.00000 0.000 0.0 0.0
> PM 0.18867 0.72659 -72.712 -537.5 -537.5
> PP 0.00000 0.00000 0.000 0.0 0.0
> WF 0.00000 0.00000 0.000 0.0 0.0
3991c3992
< unable to project, return_code = 1, 7.066635, check conifers.h for list of return codes
---
> unable to project, return_code = 1, 7.072470, check conifers.h for list of return codes
4210a4212
> unable to project, return_code = 1, 8.475283, check conifers.h for list of return codes
4534c4536
< max sdi = 399.1
---
> max sdi = 398.4
4536,4542c4538,4544
< CEIN 0.000 8.779 0.0000 250.0 250.0
< COCO 0.000 10.610 0.0000 825.0 825.0
< DF 3.164 27.698 23.2076 425.0 425.0
< IC 1.033 6.115 0.8729 150.0 500.0
< PM 5.021 33.929 89.3760 650.0 650.0
< PP 10.492 40.038 60.0388 100.0 100.0
< WF 2.531 5.427 5.2677 150.7 275.7
---
> CEIN 0.000 8.777 0.0000 250.0 250.0
> COCO 0.000 10.609 0.0000 825.0 825.0
> DF 3.146 27.708 22.9396 425.0 425.0
> IC 1.013 6.069 0.8401 150.0 500.0
> PM 5.018 33.923 89.2786 650.0 650.0
> PP 10.645 41.045 61.7992 100.0 100.0
> WF 2.531 5.464 5.2668 150.7 275.7
4562c4564
< max sdi = 392.8
---
> max sdi = 392.2
4564,4570c4566,4572
< CEIN 0.000 8.779 0.0000 250.00 250.00
< COCO 0.000 10.610 0.0000 825.00 825.00
< DF 6.119 42.645 10.4078 50.96 50.96
< IC 1.033 6.115 0.8729 150.00 500.00
< PM 5.021 33.929 89.3760 650.00 650.00
< PP 10.492 40.038 60.0388 100.00 100.00
< WF 2.531 5.427 5.2677 150.74 275.74
---
> CEIN 0.000 8.777 0.0000 250.00 250.00
> COCO 0.000 10.609 0.0000 825.00 825.00
> DF 6.085 42.687 10.2903 50.96 50.96
> IC 1.013 6.069 0.8401 150.00 500.00
> PM 5.018 33.923 89.2786 650.00 650.00
> PP 10.645 41.045 61.7992 100.00 100.00
> WF 2.531 5.464 5.2668 150.74 275.74
4582c4584
< max sdi = 390.6
---
> max sdi = 389.9
4584,4590c4586,4592
< CEIN 0.000 8.779 0.00000 250.000 250.000
< COCO 0.000 10.610 0.00000 825.000 825.000
< DF 6.273 44.296 3.26682 15.223 15.223
< IC 1.216 11.992 0.06208 7.694 11.764
< PM 4.850 33.735 2.06058 16.061 16.061
< PP 11.158 42.398 8.78039 12.931 12.931
< WF 3.776 6.818 0.36014 4.631 6.085
---
> CEIN 0.000 8.777 0.00000 250.000 250.000
> COCO 0.000 10.609 0.00000 825.000 825.000
> DF 6.243 44.336 3.23607 15.223 15.223
> IC 1.193 11.848 0.05975 7.694 11.764
> PM 4.836 33.701 2.04881 16.061 16.061
> PP 11.336 43.648 9.06281 12.931 12.931
> WF 3.777 6.995 0.36036 4.631 6.085
4602c4604
< max sdi = 380.6
---
> max sdi = 380.2
4604,4605c4606,4607
< CEIN 0.000 8.779 0.000 250.00 250.00
< COCO 0.000 10.610 0.000 825.00 825.00
---
> CEIN 0.000 8.777 0.000 250.00 250.00
> COCO 0.000 10.609 0.000 825.00 825.00
4608,4610c4610,4612
< PM 5.452 35.205 12.157 75.00 75.00
< PP 11.591 43.384 28.021 38.24 38.24
< WF 35.200 78.078 5.001 0.74 0.74
---
> PM 5.452 35.205 12.160 75.00 75.00
> PP 11.794 44.847 29.010 38.24 38.24
> WF 35.200 78.077 5.001 0.74 0.74
4622c4624
< max sdi = 392.7
---
> max sdi = 392
4624,4630c4626,4632
< CEIN 0.000 8.779 0.0000 250.0 250.0
< COCO 0.000 10.610 0.0000 825.0 825.0
< DF 3.164 27.698 23.2076 425.0 425.0
< IC 1.033 6.115 0.8729 150.0 500.0
< PM 5.211 34.657 16.6618 112.5 112.5
< PP 10.492 40.038 60.0388 100.0 100.0
< WF 2.531 5.427 5.2677 150.7 275.7
---
> CEIN 0.000 8.777 0.0000 250.0 250.0
> COCO 0.000 10.609 0.0000 825.0 825.0
> DF 3.146 27.708 22.9396 425.0 425.0
> IC 1.013 6.069 0.8401 150.0 500.0
> PM 5.204 34.638 16.6177 112.5 112.5
> PP 10.645 41.045 61.7992 100.0 100.0
> WF 2.531 5.464 5.2668 150.7 275.7
OK
checking PDF version of manual ... OK