• using R Under development (unstable) (2012-05-19 r59366)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘rangeMapper/DESCRIPTION’ ... OK
• this is package ‘rangeMapper’ version ‘0.0-6’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘rangeMapper’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File ‘rangeMapper/R/zzz.R’:
  .onLoad calls:
  require(methods)
  require(utils)
  cat(paste(sep, "This is", pkg, packageDescription("rangeMapper")$Version, "\n Type", sQuote("rangeMapper()"), "to start the graphical user interface.", "\n Type", sQuote("?rangeMapper"), "to access the help files.", sep, fill = TRUE))
  
  Package startup functions should not change the search path.
  Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
  See section ‘Good practice’ in ?.onAttach.
  
  .X.make.env: warning in assign(env, new.env(), env = .GlobalEnv):
  partial argument match of 'env' to 'envir'
  .X.chooseFunction: no visible binding for global variable
  ‘.RangeMapper’
  .X.chooseSubset: no visible binding for global variable ‘.RangeMapper’
  .X.chooseSubset : OnOK: no visible binding for '<<-' assignment to
  ‘Out’
  .X.chooseSubset: no visible binding for global variable ‘Out’
  .X.chooseVariable: no visible binding for global variable
  ‘.RangeMapper’
  .X.close: no visible binding for global variable ‘.RangeMapper’
  .X.exists: no visible binding for global variable ‘.RangeMapper’
  .X.get: no visible binding for global variable ‘.RangeMapper’
  .X.put: no visible binding for global variable ‘.RangeMapper’
  .X.rangeMap.rm: no visible binding for global variable ‘out’
  .X.tkColorPalette: no visible binding for global variable
  ‘.RangeMapper’
  .X.tkComboEntryBox: no visible binding for global variable
  ‘.RangeMapper’
  .X.tkdbBrowse.active.proj: no visible binding for global variable ‘out’
  bio.merge: no visible binding for global variable ‘dbcon’
  bio.merge : <anonymous>: no visible binding for global variable ‘dbcon’
  rangeMap.export: no visible binding for global variable ‘CON’
  tkMakeColorPalette: no visible binding for '<<-' assignment to ‘out’
  tkMakeColorPalette : PickColor: no visible binding for '<<-' assignment
  to ‘out’
  tkMakeColorPalette : PickColor: no visible binding for global variable
  ‘out’
  tkMakeColorPalette : onOK: no visible binding for global variable ‘out’
  tkMakeColorPalette : onOK: no visible binding for '<<-' assignment to
  ‘out’
  tkMakeColorPalette: no visible binding for global variable ‘out’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [91s/91s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [0s/0s] OK
• checking re-building of vignette PDFs ... [2s/3s] OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/rangeMapper.Rcheck/00check.log’
  for details.