• using R Under development (unstable) (2012-08-11 r60235)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘randomForest/DESCRIPTION’ ... OK
• this is package ‘randomForest’ version ‘4.6-6’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking whether package ‘randomForest’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  predict.randomForest: warning in matrix(t1$countts, nr = nclass, nc =
  ntest): partial argument match of 'nr' to 'nrow'
  predict.randomForest: warning in matrix(t1$countts, nr = nclass, nc =
  ntest): partial argument match of 'nc' to 'ncol'
  print.randomForest: warning in round(x$err.rate[x$ntree, "OOB"] * 100,
  dig = 2): partial argument match of 'dig' to 'digits'
  print.randomForest: warning in round(x$test$err.rate[x$ntree, "Test"] *
  100, dig = 2): partial argument match of 'dig' to 'digits'
  print.randomForest: warning in round(100 * x$rsq[length(x$rsq)], dig =
  2): partial argument match of 'dig' to 'digits'
  print.randomForest: warning in round(x$test$mse[length(x$test$mse)],
  dig = 2): partial argument match of 'dig' to 'digits'
  print.randomForest: warning in round(100 *
  x$test$rsq[length(x$test$rsq)], dig = 2): partial argument match of
  'dig' to 'digits'
  randomForest.default: warning in factor(rfout$outcl, levels = 1:nclass,
  label = levels(y)): partial argument match of 'label' to 'labels'
  randomForest.default: warning in factor(rfout$outclts, levels =
  1:nclass, label = levels(y)): partial argument match of 'label' to
  'labels'
  randomForest.default: warning in matrix(rfout$nodestatus, nc = ntree):
  partial argument match of 'nc' to 'ncol'
  randomForest.default: warning in matrix(rfout$bestvar, nc = ntree):
  partial argument match of 'nc' to 'ncol'
  randomForest.default: warning in matrix(rfout$nodepred, nc = ntree):
  partial argument match of 'nc' to 'ncol'
  randomForest.default: warning in matrix(rfout$xbestsplit, nc = ntree):
  partial argument match of 'nc' to 'ncol'
  randomForest.formula: warning in match.call(expand = FALSE): partial
  argument match of 'expand' to 'expand.dots'
  rfImpute.formula: warning in match.call(expand = FALSE): partial
  argument match of 'expand' to 'expand.dots'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... [18s/18s] OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/randomForest.Rcheck/00check.log’
  for details.