• using R Under development (unstable) (2012-05-19 r59366)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘mkin/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘mkin’ version ‘0.8-11’
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... WARNING
  As from R 2.14.0 all packages need a namespace.
  One will be generated on installation, but it is better to handcraft a
  NAMESPACE file: R CMD build will produce a suitable starting point.
  CRAN requires a NAMESPACE file for all submissions.
• checking for executable files ... OK
• checking whether package ‘mkin’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  print.summary.mkinfit: warning in printCoefmat(x$par[, c(1, 2, 4)],
  cs.in = c(1, 2), tst.ind = integer(0), P.values = TRUE, has.Pvalue =
  TRUE, digits = digits, ...): partial argument match of 'cs.in' to
  'cs.ind'
  mkin_long_to_wide: no visible binding for global variable ‘name’
  mkin_long_to_wide: no visible binding for global variable ‘value’
  mkinfit: no visible binding for global variable ‘name’
  mkinfit : cost: no visible binding for global variable ‘name’
  mkinfit : cost: no visible binding for global variable ‘value’
  mkinfit: no visible binding for global variable ‘out_transformed_plot’
  mkinplot: no visible binding for global variable ‘type’
  mkinplot: no visible binding for global variable ‘variable’
  mkinplot: no visible binding for global variable ‘observed’
  mkinresplot: no visible binding for global variable ‘variable’
  mkinresplot: no visible binding for global variable ‘residual’
  mkinstart: no visible binding for global variable ‘name’
• checking Rd files ... NOTE
  prepare_Rd: mkinstart.Rd:26-28: Dropping empty section \details
  prepare_Rd: mkinstart.Rd:35-37: Dropping empty section \examples
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... NOTE
  The following files should probably not be installed:
  ‘header.tex’
  
  Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
  or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
• checking examples ... [4s/4s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [12s/12s] OK
  Running ‘doRUnit.R’ [12s/12s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [19s/19s] OK
• checking re-building of vignette PDFs ... [22s/23s] OK
• checking PDF version of manual ... OK
  WARNING: There was 1 warning.
  NOTE: There were 3 notes.
  See
  ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/mkin.Rcheck/00check.log’
  for details.