• using R Under development (unstable) (2012-05-19 r59366)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘longitudinalData/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘longitudinalData’ version ‘2.0’
• package encoding: latin1
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘longitudinalData’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  .listPartition.get: no visible binding for global variable ‘listI’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... ERROR
  Running examples in ‘longitudinalData-Ex.R’ failed
  The error most likely occurred in:
  
  > ### Name: LongData-class
  > ### Title: ~ Class: LongData ~
  > ### Aliases: LongData LongData-class [,LongData-method [<-,LongData-method
  > ### show,LongData-method
  > ### Keywords: classes classif cluster ts
  >
  > ### ** Examples
  >
  > #################
  > ### building trajectory (longData)
  > mat <- matrix(c(NA,2,3,4,1,6,2,5,1,3,8,10),4)
  > ld <- longData(mat,idAll=c("I1","I2","I3","I4"),time=c(2,4,8),varNames="Age")
  >
  > ### '[' and '[<-'
  > ld["idAll"]
  [1] "I1" "I2" "I3" "I4"
  > ld["idFewNA"]
  [1] "I1" "I2" "I3" "I4"
  > ld["varNames"]
  [1] "Age"
  > ld["traj"]
  t2 t4 t8
  I1 NA 1 1
  I2 2 6 3
  I3 3 2 8
  I4 4 5 10
  > (ld)
  
  ~~~ Class: LongData ~~~
  ~ idAll = [4] I1 I2 I3 I4
  ~ idFewNA = [4] I1 I2 I3 I4
  ~ varNames = [1] Age
  ~ time = [3] 2 4 8
  ~ maxNA = [1] 1
  ~ reverse = [2x1]
  - mean = 0
  - SD = 1
  
  ~ traj = [4x3] (limited to 5x10) :
  t2 t4 t8
  I1 NA 1 1
  I2 2 6 3
  I3 3 2 8
  I4 4 5 10
  >
  > ### Plot
  > plot(ld)
  >
  >
  > #################
  > ### building join trajectories (longData3d)
  > dn <- data.frame(id=1:3,v1=c(11,14,16),t1=c(1,5,7),v2=c(12,10,13),t2=c(2,5,0),t3=c(3,6,8))
  > (ld <- longData3d(dn,timeInData=list(Vir=c(2,4,NA),Tes=c(3,5,6))))
  
  ~~~ Class: LongData3d ~~~
  ~ idAll = [3] 1 2 3
  ~ idFewNA = [3] 1 2 3
  ~ varNames = [2] Vir Tes
  ~ time = [3] 1 2 3
  ~ maxNA = [2] 1 1
  ~ reverse = [2x2]
  - mean = 0 0
  - SD = 1 1
  
  ~ traj = [3x3x2] (limited to 5x10x3) :
  
  Vir :
  t1 t2 t3
  1 11 12 NA
  2 14 10 NA
  3 16 13 NA
  
  Tes :
  t1 t2 t3
  1 1 2 3
  2 5 5 6
  3 7 0 8
  >
  > ### Scaling
  > scale(ld)
  > (ld)
  
  ~~~ Class: LongData3d ~~~
  ~ idAll = [3] 1 2 3
  ~ idFewNA = [3] 1 2 3
  ~ varNames = [2] Vir Tes
  ~ time = [3] 1 2 3
  ~ maxNA = [2] 1 1
  ~ reverse = [2x2]
  - mean = 12.66667 4.111111
  - SD = 2.160247 2.758824
  
  ~ traj = [3x3x2] (limited to 5x10x3) :
  
  Vir :
  t1 t2 t3
  1 -0.7715167 -0.3086067 NA
  2 0.6172134 -1.2344268 NA
  3 1.5430335 0.1543033 NA
  
  Tes :
  t1 t2 t3
  1 -1.1276946 -0.7652213 -0.4027481
  2 0.3221984 0.3221984 0.6846717
  3 1.0471450 -1.4901678 1.4096182
  >
  > ### Plotting
  > plot(ld)
  > plot3d(ld)
  Error in rgl.open() : rgl.open failed
  Calls: plot3d -> plot3d -> .local -> open3d -> rgl.open
  Execution halted