Check results for 'lasso2'

using R Under development (unstable) (2012-05-19 r59366)
using platform: x86_64-unknown-linux-gnu (64-bit)
using session charset: UTF-8
checking for file ‘lasso2/DESCRIPTION’ ... OK
this is package ‘lasso2’ version ‘1.2-12’
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... WARNING
As from R 2.14.0 all packages need a namespace.
One will be generated on installation, but it is better to handcraft a
NAMESPACE file: R CMD build will produce a suitable starting point.
CRAN requires a NAMESPACE file for all submissions.
checking for executable files ... OK
checking whether package ‘lasso2’ can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking loading without being on the library search path ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... NOTE
File ‘lasso2/R/First.lib.q’:
.First.lib calls:
cat("R Package to solve regression problems while imposing", "\t an L1 constraint on the parameters. Based on S-plus Release 2.1", "Copyright (C) 1998, 1999", "Justin Lokhorst <jlokhors@stats.adelaide.edu.au>", "Berwin A. Turlach <bturlach@stats.adelaide.edu.au>", "Bill Venables <wvenable@stats.adelaide.edu.au>\n", "Copyright (C) 2002", "Martin Maechler <maechler@stat.math.ethz.ch>\n", sep = "\n")

Package startup functions should use ‘packageStartupMessage’ to
generate messages.
See section ‘Good practice’ in ?.onAttach.

gl1ce: warning in match.call(expand = FALSE): partial argument match of
'expand' to 'expand.dots'
gl1ce: warning in assign("dev.res", family$dev.res, env = ee): partial
argument match of 'env' to 'envir'
l1ce: warning in match.call(expand = FALSE): partial argument match of
'expand' to 'expand.dots'
gl1ce : <anonymous>: no visible global function definition for
‘dev.res’
gl1ce: no visible binding for global variable ‘mustart’
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking compiled code ... NOTE
File ‘/home/hornik/tmp/R.check/r-devel/Work/build/Packages/lasso2/libs/lasso2.so’:
Found ‘printf’, possibly from ‘printf’ (C)
Object: ‘lasso.o’
Found ‘putchar’, possibly from ‘putchar’ (C)
Object: ‘lasso.o’
Found ‘puts’, possibly from ‘printf’ (C), ‘puts’ (C)
Object: ‘lasso.o’

Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checking sizes of PDF files under ‘inst/doc’ ... OK
checking installed files from ‘inst/doc’ ... NOTE
The following files should probably not be installed:
‘Manual-vignette.tex’

Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
checking examples ... [1s/1s] OK
checking for unstated dependencies in tests ... OK
checking tests ... [2s/2s] OK
Running ‘l1ce-tst.R’ [1s/1s]
Comparing ‘l1ce-tst.Rout’ to ‘l1ce-tst.Rout.save’ ...183,199c183,199
< [1,] 0.00000000 0.00000000 0.0000000000
< [2,] 0.00000000 0.00000000 0.0000000000
< [3,] 0.00000000 0.00000000 0.0000000000
< [4,] 0.00000000 0.00000000 0.0000000000
< [5,] 0.00000000 0.00000000 0.0000000000
< [6,] 0.00000000 0.00000000 0.0000000000
< [7,] 0.00000000 0.00000000 0.0000000000
< [8,] 0.00000000 0.00000000 0.0000000000
< [9,] 0.00000000 0.00000000 0.0001812107
< [10,] 0.00000000 0.00000000 0.0009116063
< [11,] 0.00000000 0.00000000 0.0016192221
< [12,] 0.00000000 0.00000000 0.0022257752
< [13,] -0.00166150 0.01304748 0.0025835545
< [14,] -0.02761452 0.02106960 0.0030689967
< [15,] -0.05356754 0.02909172 0.0035544390
< [16,] -0.07952055 0.03711384 0.0040398813
< [17,] -0.10547357 0.04513596 0.0045253236
---
> [1,] 0.000000000 0.00000000 0.0000000000
> [2,] 0.000000000 0.00000000 0.0000000000
> [3,] 0.000000000 0.00000000 0.0000000000
> [4,] 0.000000000 0.00000000 0.0000000000
> [5,] 0.000000000 0.00000000 0.0000000000
> [6,] 0.000000000 0.00000000 0.0000000000
> [7,] 0.000000000 0.00000000 0.0000000000
> [8,] 0.000000000 0.00000000 0.0000000000
> [9,] 0.000000000 0.00000000 0.0001812107
> [10,] 0.000000000 0.00000000 0.0009116063
> [11,] 0.000000000 0.00000000 0.0016192221
> [12,] 0.000000000 0.00000000 0.0022257752
> [13,] -0.001661500 0.01304748 0.0025835545
> [14,] -0.027614518 0.02106960 0.0030689967
> [15,] -0.053567535 0.02909172 0.0035544390
> [16,] -0.079520552 0.03711384 0.0040398813
> [17,] -0.105473570 0.04513596 0.0045253236
checking for unstated dependencies in vignettes ... OK
checking package vignettes in ‘inst/doc’ ... OK
checking running R code from vignettes ... [0s/0s] OK
checking re-building of vignette PDFs ... [1s/2s] OK
checking PDF version of manual ... OK
WARNING: There was 1 warning.
NOTE: There were 3 notes.
See
‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/lasso2.Rcheck/00check.log’
for details.