- using R Under development (unstable) (2012-08-11 r60235)
- using platform: x86_64-unknown-linux-gnu (64-bit)
- using session charset: UTF-8
- checking for file ‘distrMod/DESCRIPTION’ ... OK
- this is package ‘distrMod’ version ‘2.3.1’
- package encoding: latin1
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking whether package ‘distrMod’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
File ‘distrMod/R/AllClass.R’:
.onLoad calls:
require("methods", character = TRUE, quietly = TRUE)
require("distr", character = TRUE, quietly = TRUE)
require("distrEx", character = TRUE, quietly = TRUE)
require("RandVar", character = TRUE, quietly = TRUE)
Package startup functions should not change the search path.
See section ‘Good practice’ in ?.onAttach.
.CvMMDCovariance: warning in assign("i", i, env = env.i): partial
argument match of 'env' to 'envir'
.CvMMDCovariance: warning in assign("fct", fct, env = env.i): partial
argument match of 'env' to 'envir'
.CvMMDCovariance: warning in assign("fct0", fct0, env = env.i): partial
argument match of 'env' to 'envir'
.CvMMDCovariance: warning in assign("Delta", Delta, env = env.i):
partial argument match of 'env' to 'envir'
.CvMMDCovariance: warning in assign("Delta0", Delta0, env = env.i):
partial argument match of 'env' to 'envir'
.CvMMDCovariance: warning in assign("Delta1", Delta1, env = env.i):
partial argument match of 'env' to 'envir'
.CvMMDCovariance: warning in assign("psi0", psi0, env = env.i): partial
argument match of 'env' to 'envir'
.CvMMDCovariance: warning in assign("phi0a", phi0a, env = env.i):
partial argument match of 'env' to 'envir'
.CvMMDCovariance: warning in assign("phi0", phi0, env = env.i): partial
argument match of 'env' to 'envir'
.onLoad: warning in require("methods", character = TRUE, quietly =
TRUE): partial argument match of 'character' to 'character.only'
.onLoad: warning in require("distr", character = TRUE, quietly = TRUE):
partial argument match of 'character' to 'character.only'
.onLoad: warning in require("distrEx", character = TRUE, quietly =
TRUE): partial argument match of 'character' to 'character.only'
.onLoad: warning in require("RandVar", character = TRUE, quietly =
TRUE): partial argument match of 'character' to 'character.only'
CauchyLocationScaleFamily: warning in L2LocationScaleFamily(loc = loc,
scale = scale, name = "Cauchy Location and scale family",
centraldistribution = Cauchy(), LogDeriv = function(x) 2 * x/(x^2 +
1), distrSymm = SphericalSymmetry(SymmCenter = loc), L2derivSymm =
FunSymmList(OddSymmetric(SymmCenter = loc), EvenSymmetric(SymmCenter
= loc)), L2derivDistrSymm = DistrSymmList(SphericalSymmetry(),
NoSymmetry()), L2derivDistr = UnivarDistrList(Arcsine(),
abs(Arcsine())), FisherInfo.0 = matrix(c(1, 0, 0, 1)/2, 2, 2,
dimnames = list(c("loc", : partial argument match of 'L2derivDistr'
to 'L2derivDistr.0'
CauchyLocationScaleFamily: warning in "scale"), c("loc", "scale"))),
trafo = trafo, .returnClsName = "CauchyLocationScaleFamily"): partial
argument match of 'L2derivDistr' to 'L2derivDistr.0'
NbinomMeanSizeFamily : FisherInfo.fct: warning in qnbinom(1e-06, size =
size, prob = prob.0, lower = FALSE): partial argument match of
'lower' to 'lower.tail'
NbinomwithSizeFamily : FisherInfo.fct: warning in qnbinom(1e-06, size =
size, prob = prob, lower = FALSE): partial argument match of 'lower'
to 'lower.tail'
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking examples ... [50s/50s] OK
- checking differences from ‘distrMod-Ex.Rout’ to ‘distrMod-Ex.Rout.save’ ...
2c2
< :startupmsg> Utilities for start-up messages (version 0.7.2)
---
> :startupmsg> Utilities for start-up messages (version 0.7.1)
8,9c8
< :SweaveListingUtils> TeX listings package (version
< :SweaveListingUtils> 0.5.5)
---
> :SweaveListingUtils> TeX listings package (version 0.5)
35c34
< :distr> 2.3.3)
---
> :distr> 2.3)
67c66
< :distrEx> Extensions of package distr (version 2.3.1)
---
> :distrEx> Extensions of package distr (version 2.3)
86c85
< :RandVar> Implementation of random variables (version 0.8.1)
---
> :RandVar> Implementation of random variables (version 0.8)
95c94
< :distrMod> (version 2.3.1)
---
> :distrMod> (version 2.3)
375,376c374,375
< shape 0.000 1
< rate -8.549 0
---
> shape 0.00 1
> rate -8.55 0
566c565
< precision of centering: -1.51181e-06
---
> precision of centering: -1.511810e-06
693c692
< precision of centering: -1.51181e-06 1.312514e-06
---
> precision of centering: -1.511810e-06 1.312514e-06
749c748
< precision of centering: 1.51181e-06
---
> precision of centering: 1.511810e-06
1544,1545c1543,1544
< 3.0117885 1.8655681
< (0.5721425) (0.3856279)
---
> 3.0117832 1.8655645
> (0.5721423) (0.3856279)
1588,1589c1587,1588
< 3.0117885 1.8655681
< (0.5721425) (0.3856279)
---
> 3.0117832 1.8655645
> (0.5721423) (0.3856279)
3042d3040
< Warning in densfun(x, parm[1], parm[2], ...) : NaNs produced
3044,3045c3042,3043
< 4.0606867 2.9242396
< (0.7810673) (0.5987423)
---
> 4.0607656 2.9242972
> (0.7810853) (0.5987559)
3082,3083c3080,3081
< 4.0606867 2.9242396
< (0.7810673) (0.5987423)
---
> 4.0607656 2.9242972
> (0.7810853) (0.5987559)
3097,3098c3095,3096
< shape 2.529823 5.591550
< rate 1.750726 4.097753
---
> shape 2.529866 5.591665
> rate 1.750757 4.097837
OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... [19s/19s] OK
- checking re-building of vignette PDFs ... [22s/23s] OK
- checking PDF version of manual ... OK
NOTE: There was 1 note.
See
‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/distrMod.Rcheck/00check.log’
for details.