• using R Under development (unstable) (2012-05-19 r59366)
  • using platform: x86_64-unknown-linux-gnu (64-bit)
  • using session charset: UTF-8
  • checking for file ‘candisc/DESCRIPTION’ ... OK
  • checking extension type ... Package
  • this is package ‘candisc’ version ‘0.5-21’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking whether package ‘candisc’ can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking loading without being on the library search path ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    heplot3d.candisc: warning in texts3d(cs, text = rownames(cs), col =
    var.col, cex = var.cex): partial argument match of 'text' to 'texts'
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking examples ... ERROR
    Running examples in ‘candisc-Ex.R’ failed
    The error most likely occurred in:

    > ### Name: heplot.candisc
    > ### Title: Canonical Discriminant HE plots
    > ### Aliases: heplot.candisc heplot3d.candisc
    > ### Keywords: multivariate hplot
    >
    > ### ** Examples
    >
    > grass.mod <- lm(cbind(N1,N9,N27,N81,N243) ~ Block + Species, data=Grass)
    >
    > grass.can1 <-candisc(grass.mod, term="Species")
    > grass.canL <-candiscList(grass.mod)
    >
    > heplot(grass.can1, scale=6)
    > heplot(grass.can1, scale=6, terms=TRUE)
    > heplot(grass.canL, terms=TRUE, ask=FALSE)
    Vector scale factor set to 4
    Vector scale factor set to 5
    >
    > heplot3d(grass.can1, wire=FALSE)
    Loading required package: rgl
    Warning in rgl.init(initValue) : RGL: GLX extension missing on server
    Warning in fun(libname, pkgname) : error in rgl_init

    *** caught segfault ***
    address 0x20, cause 'memory not mapped'

    Traceback:
    1: .External(rgl_par3d, args)
    2: par3d("scale")
    3: rgl.viewpoint(fov = fov)
    4: heplot3d.mlm(can.mod, terms = terms, factor.means = term, xlab = canlab[1], ylab = canlab[2], zlab = canlab[3], ...)
    5: heplot3d(can.mod, terms = terms, factor.means = term, xlab = canlab[1], ylab = canlab[2], zlab = canlab[3], ...)
    6: heplot3d.candisc(grass.can1, wire = FALSE)
    7: heplot3d(grass.can1, wire = FALSE)
    aborting ...