- using R Under development (unstable) (2012-05-19 r59366)
- using platform: x86_64-unknown-linux-gnu (64-bit)
- using session charset: UTF-8
- checking for file ‘candisc/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘candisc’ version ‘0.5-21’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking whether package ‘candisc’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
heplot3d.candisc: warning in texts3d(cs, text = rownames(cs), col =
var.col, cex = var.cex): partial argument match of 'text' to 'texts'
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... ERROR
Running examples in ‘candisc-Ex.R’ failed
The error most likely occurred in:
> ### Name: heplot.candisc
> ### Title: Canonical Discriminant HE plots
> ### Aliases: heplot.candisc heplot3d.candisc
> ### Keywords: multivariate hplot
>
> ### ** Examples
>
> grass.mod <- lm(cbind(N1,N9,N27,N81,N243) ~ Block + Species, data=Grass)
>
> grass.can1 <-candisc(grass.mod, term="Species")
> grass.canL <-candiscList(grass.mod)
>
> heplot(grass.can1, scale=6)
> heplot(grass.can1, scale=6, terms=TRUE)
> heplot(grass.canL, terms=TRUE, ask=FALSE)
Vector scale factor set to 4
Vector scale factor set to 5
>
> heplot3d(grass.can1, wire=FALSE)
Loading required package: rgl
Warning in rgl.init(initValue) : RGL: GLX extension missing on server
Warning in fun(libname, pkgname) : error in rgl_init
*** caught segfault ***
address 0x20, cause 'memory not mapped'
Traceback:
1: .External(rgl_par3d, args)
2: par3d("scale")
3: rgl.viewpoint(fov = fov)
4: heplot3d.mlm(can.mod, terms = terms, factor.means = term, xlab = canlab[1], ylab = canlab[2], zlab = canlab[3], ...)
5: heplot3d(can.mod, terms = terms, factor.means = term, xlab = canlab[1], ylab = canlab[2], zlab = canlab[3], ...)
6: heplot3d.candisc(grass.can1, wire = FALSE)
7: heplot3d(grass.can1, wire = FALSE)
aborting ...