• using R Under development (unstable) (2012-08-11 r60235)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘betareg/DESCRIPTION’ ... OK
• this is package ‘betareg’ version ‘3.0-2’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking whether package ‘betareg’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [30s/30s] OK
• checking differences from ‘betareg-Ex.Rout’ to ‘betareg-Ex.Rout.save’ ...
  139c139
  < Number of iterations: 147 (BFGS) + 4 (Fisher scoring)
  ---
  > Number of iterations: 144 (BFGS) + 5 (Fisher scoring)
  1006c1006
  < statistic 2.268741e+01 8.5250962 5.569861 1.0567635
  ---
  > statistic 2.268741e+01 8.5250961 5.569861 1.0567635
  1085c1085
  < statistic 8.5250962 5.569861 1.0567635 19.94405064
  ---
  > statistic 8.5250961 5.569861 1.0567635 19.94405058
  1122c1122
  < Number of iterations: 17 (BFGS) + 2 (Fisher scoring)
  ---
  > Number of iterations: 17 (BFGS) + 1 (Fisher scoring)
  OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [19s/19s] OK
  Running ‘betamix.R’ [13s/13s]
  Comparing ‘betamix.Rout’ to ‘betamix.Rout.save’ ...76,77c76,77
  < [10,] 9.426572e-02 8.522170e-34 0.9057343
  < [11,] 3.074747e-02 3.171892e-33 0.9692525
  ---
  > [10,] 9.426572e-02 8.522169e-34 0.9057343
  > [11,] 3.074747e-02 3.171891e-33 0.9692525
  86c86
  < [20,] 2.378348e-01 7.419916e-35 0.7621652
  ---
  > [20,] 2.378348e-01 7.419915e-35 0.7621652
  Running ‘betatree.R’ [3s/3s]
  Comparing ‘betatree.Rout’ to ‘betatree.Rout.save’ ...101c101
  < statistic 2.268741e+01 8.5250962 5.569861 3.6273300
  ---
  > statistic 2.268741e+01 8.5250961 5.569861 3.6273300
  Running ‘bias.R’ [3s/3s]
  Comparing ‘bias.Rout’ to ‘bias.Rout.save’ ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [23s/23s] OK
• checking re-building of vignette PDFs ... [34s/35s] OK
• checking PDF version of manual ... OK