• using R Under development (unstable) (2012-08-11 r60235)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘aster/DESCRIPTION’ ... OK
• this is package ‘aster’ version ‘0.7-8’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking whether package ‘aster’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [10s/10s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [15s/15s] OK
  Running ‘aster.R’ [1s/1s]
  Comparing ‘aster.Rout’ to ‘aster.Rout.save’ ...61c61
  < [1] "Mean relative difference: 2.123657e-08"
  ---
  > [1] "Mean relative difference: 2.127142e-08"
  63c63
  < [1] "Mean relative difference: 1.97014e-08"
  ---
  > [1] "Mean relative difference: 1.970140e-08"
  Running ‘chk.R’ [0s/1s]
  Comparing ‘chk.Rout’ to ‘chk.Rout.save’ ... OK
  Running ‘famber.R’ [0s/0s]
  Comparing ‘famber.Rout’ to ‘famber.Rout.save’ ... OK
  Running ‘famnegbin.R’ [1s/1s]
  Comparing ‘famnegbin.Rout’ to ‘famnegbin.Rout.save’ ... OK
  Running ‘famnorloc.R’ [0s/0s]
  Comparing ‘famnorloc.Rout’ to ‘famnorloc.Rout.save’ ... OK
  Running ‘famnzp.R’ [0s/0s]
  Comparing ‘famnzp.Rout’ to ‘famnzp.Rout.save’ ... OK
  Running ‘fampoi.R’ [0s/0s]
  Comparing ‘fampoi.Rout’ to ‘fampoi.Rout.save’ ... OK
  Running ‘famtnb.R’ [1s/1s]
  Comparing ‘famtnb.Rout’ to ‘famtnb.Rout.save’ ... OK
  Running ‘foobar.R’ [0s/0s]
  Comparing ‘foobar.Rout’ to ‘foobar.Rout.save’ ... OK
  Running ‘formula.R’ [1s/1s]
  Comparing ‘formula.Rout’ to ‘formula.Rout.save’ ... OK
  Running ‘gradmat.R’ [1s/1s]
  Comparing ‘gradmat.Rout’ to ‘gradmat.Rout.save’ ...99c99
  < varbl3 6.671e-16 7.319e-01 0.000 1.000
  ---
  > varbl3 7.393e-16 7.319e-01 1.01e-15 1.000
  Running ‘ktnb.R’ [1s/1s]
  Comparing ‘ktnb.Rout’ to ‘ktnb.Rout.save’ ...48,59c48,59
  < 3 4 5 6 7 8 9
  < observed 707.0000 724.0000 799.0000 798.0000 742.0000 637.0000 597.0000
  < expected 708.2678 756.5403 770.2821 758.6016 729.0392 687.6125 638.9911
  < 10 11 12 13 14 15 16 17
  < observed 547.0000 522.0000 443.0000 410.0000 382.0000 336.000 326.0000 301.000
  < expected 586.7091 533.3719 480.8435 430.4065 382.8955 338.806 298.3818 261.684
  < 18 19 20 21 22 23 24 25
  < observed 235.0000 215.0000 183.0000 135.0000 140.0000 115.000 100.0000 95.0000
  < expected 228.6446 199.1082 172.8635 149.6666 129.2586 111.378 95.7691 82.1881
  < 26 27 28 29 30 31 32 33
  < observed 73.00000 74.00000 51.00000 39.00000 36.0000 40.00000 36.00000 18.00000
  < expected 70.40659 60.21367 51.41676 43.84172 37.3323 31.74924 26.96912 22.88316
  ---
  > 3 4 5 6 7 8 9 10
  > observed 707.0000 724.0000 799.000 798.0000 742.0000 637.0000 597.0000 547.0000
  > expected 708.2678 756.5403 770.282 758.6016 729.0392 687.6125 638.9911 586.7091
  > 11 12 13 14 15 16 17 18
  > observed 522.0000 443.0000 410.0000 382.0000 336.000 326.0000 301.0000 235.0000
  > expected 533.3719 480.8435 430.4065 382.8955 338.806 298.3818 261.6840 228.6446
  > 19 20 21 22 23 24 25 26
  > observed 215.0000 183.0000 135.0000 140.0000 115.000 100.0000 95.0000 73.00000
  > expected 199.1082 172.8635 149.6666 129.2586 111.378 95.7691 82.1881 70.40659
  > 27 28 29 30 31 32 33
  > observed 74.00000 51.00000 39.00000 36.00000 40.00000 36.00000 18.00000
  > expected 60.21367 51.41676 43.84172 37.33230 31.74924 26.96912 22.88316
  61,62c61,62
  < observed 28.00000 12.0000 18.00000 17.00000 13.000000 11.000000 45.00000
  < expected 19.39585 16.4237 13.89395 11.74344 9.917429 8.368659 44.13479
  ---
  > observed 28.00000 12.00000 18.00000 17.00000 13.00000 11.00000 45.00000
  > expected 19.39585 16.42370 13.89395 11.74344 9.91743 8.36866 44.13479
  94,95c94,95
  < observed 137.0000 82.00000 40.00000 31.00000 12.0000 10.000000 7.00000
  < expected 136.2532 80.15125 46.75631 27.08143 15.5894 8.925991 11.69563
  ---
  > observed 137.0000 82.00000 40.00000 31.00000 12.00000 10.00000 7.00000
  > expected 136.2532 80.15125 46.75631 27.08143 15.58940 8.92599 11.69563
  105,110c105,110
  < 3 4 5 6 7 8 9 10
  < observed 4877.000 2621.000 1286.00 630.0000 329.0000 142.0000 69.00000 23.00000
  < expected 4925.874 2591.642 1299.72 630.4796 298.4457 138.6486 63.46345 28.70178
  < 11 12
  < observed 11.00000 12.00000
  < expected 12.85208 10.17242
  ---
  > 3 4 5 6 7 8 9
  > observed 4877.000 2621.000 1286.000 630.0000 329.0000 142.0000 69.00000
  > expected 4925.874 2591.642 1299.720 630.4796 298.4457 138.6486 63.46345
  > 10 11 12
  > observed 23.00000 11.00000 12.00000
  > expected 28.70178 12.85208 10.17242
  133,134c133,134
  < observed 9424.000 558.0000 18.00000
  < expected 9439.299 530.7065 29.99429
  ---
  > observed 9424.0 558.0000 18.00000
  > expected 9439.3 530.7065 29.99429
  191,192c191,192
  < observed 244.0000 151.0000 141.0000 82.00000 49.0000 38.00000 23.0000 12.00000
  < expected 226.7492 158.9475 110.4363 76.10968 52.0619 35.36725 23.8729 16.01878
  ---
  > observed 244.0000 151.0000 141.0000 82.00000 49.0000 38.00000 23.00000 12.00000
  > expected 226.7492 158.9475 110.4363 76.10968 52.0619 35.36725 23.87290 16.01878
  Running ‘ktp.R’ [1s/1s]
  Comparing ‘ktp.Rout’ to ‘ktp.Rout.save’ ...64,65c64,65
  < observed 3208.000 2715.000 1933.00 1127.000 578.0000 296.000 96.00000 32.0000
  < expected 3177.274 2780.115 1946.08 1135.214 567.6068 248.328 96.57199 33.8002
  ---
  > observed 3208.000 2715.000 1933.000 1127.000 578.0000 296.000 96.000 32.0000
  > expected 3177.274 2780.115 1946.080 1135.214 567.6068 248.328 96.572 33.8002
  67,68c67,68
  < observed 15.0000
  < expected 15.0098
  ---
  > observed 15.00000
  > expected 15.00980
  146c146
  < chi squared statistic = 8.997171
  ---
  > chi squared statistic = 8.99717
  203c203
  < [1] -14.1133
  ---
  > [1] -14.11330
  217c217
  < [1] 14.1133
  ---
  > [1] 14.11330
  Running ‘matops.R’ [0s/0s]
  Comparing ‘matops.Rout’ to ‘matops.Rout.save’ ... OK
  Running ‘mlogl-cond.R’ [1s/1s]
  Comparing ‘mlogl-cond.Rout’ to ‘mlogl-cond.Rout.save’ ... OK
  Running ‘mlogl-unco.R’ [2s/2s]
  Comparing ‘mlogl-unco.Rout’ to ‘mlogl-unco.Rout.save’ ...47c47
  < [1] 123.968
  ---
  > [1] 123.9680
  167c167
  < [1] "Component 2: Mean relative difference: 3.231041e-08"
  ---
  > [1] "Component 2: Mean relative difference: 3.221245e-08"
  217c217
  < [1] 1.62499699 -1.45880303 -0.96551358 -1.61551440 -2.06945329 -0.08435911
  ---
  > [1] 1.62499634 -1.45880221 -0.96551285 -1.61551376 -2.06945265 -0.08435909
  220,221c220,221
  < [1] -8.782154e-05 1.855168e-05 5.256865e-05 2.242456e-05 6.380929e-05
  < [6] 4.815237e-05
  ---
  > [1] -8.888587e-05 1.875676e-05 5.313826e-05 2.266534e-05 6.445778e-05
  > [6] 4.977037e-05
  227c227
  < [1] 974
  ---
  > [1] 972
  259c259
  < [1] "Mean relative difference: 4.577958e-05"
  ---
  > [1] "Mean relative difference: 4.622505e-05"
  Running ‘newfam.R’ [0s/0s]
  Comparing ‘newfam.Rout’ to ‘newfam.Rout.save’ ... OK
  Running ‘nzp.R’ [1s/1s]
  Comparing ‘nzp.Rout’ to ‘nzp.Rout.save’ ... OK
  Running ‘predict.R’ [1s/1s]
  Comparing ‘predict.Rout’ to ‘predict.Rout.save’ ...156c156
  < varbl3 6.671e-16 7.319e-01 0.000 1.000
  ---
  > varbl3 7.393e-16 7.319e-01 1.01e-15 1.000
  Running ‘raster.R’ [0s/0s]
  Comparing ‘raster.Rout’ to ‘raster.Rout.save’ ... OK
  Running ‘trans.R’ [1s/1s]
  Comparing ‘trans.Rout’ to ‘trans.Rout.save’ ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [59s/59s] OK
• checking re-building of vignette PDFs ... [57s/57s] OK
• checking PDF version of manual ... OK