• using R Under development (unstable) (2012-08-11 r60235)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘ade4TkGUI/DESCRIPTION’ ... OK
• this is package ‘ade4TkGUI’ version ‘0.2-5’
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... NOTE
  As from R 2.14.0 all packages need a namespace.
  One will be generated on installation, but it is better to handcraft a
  NAMESPACE file: R CMD build will produce a suitable starting point.
  CRAN requires a NAMESPACE file for all submissions.
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking whether package ‘ade4TkGUI’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  dialog.MCTests : execcomp: warning in deparse(cmd, width = 256):
  partial argument match of 'width' to 'width.cutoff'
  dialog.MCTests : execcomp: warning in deparse(cmd, width = 500):
  partial argument match of 'width' to 'width.cutoff'
  dialog.between : execcomp: warning in deparse(cmd, width = 256):
  partial argument match of 'width' to 'width.cutoff'
  dialog.between : execcomp: warning in deparse(cmd, width = 500):
  partial argument match of 'width' to 'width.cutoff'
  dialog.cca : execcomp: warning in deparse(cmd, width = 256): partial
  argument match of 'width' to 'width.cutoff'
  dialog.cca : execcomp: warning in deparse(cmd, width = 500): partial
  argument match of 'width' to 'width.cutoff'
  dialog.coinertia : execcomp: warning in deparse(cmd, width = 256):
  partial argument match of 'width' to 'width.cutoff'
  dialog.coinertia : execcomp: warning in deparse(cmd, width = 500):
  partial argument match of 'width' to 'width.cutoff'
  dialog.discrimin : execcomp: warning in deparse(cmd, width = 256):
  partial argument match of 'width' to 'width.cutoff'
  dialog.discrimin : execcomp: warning in deparse(cmd, width = 500):
  partial argument match of 'width' to 'width.cutoff'
  dialog.dpcoa : execcomp: warning in deparse(cmd, width = 256): partial
  argument match of 'width' to 'width.cutoff'
  dialog.dpcoa : execcomp: warning in deparse(cmd, width = 500): partial
  argument match of 'width' to 'width.cutoff'
  dialog.dudi.acm : execcomp: warning in deparse(cmd, width = 256):
  partial argument match of 'width' to 'width.cutoff'
  dialog.dudi.acm : execcomp: warning in deparse(cmd, width = 500):
  partial argument match of 'width' to 'width.cutoff'
  dialog.dudi.coa : execcomp: warning in deparse(cmd, width = 256):
  partial argument match of 'width' to 'width.cutoff'
  dialog.dudi.coa : execcomp: warning in deparse(cmd, width = 500):
  partial argument match of 'width' to 'width.cutoff'
  dialog.dudi.dec : execcomp: warning in deparse(cmd, width = 256):
  partial argument match of 'width' to 'width.cutoff'
  dialog.dudi.dec : execcomp: warning in deparse(cmd, width = 500):
  partial argument match of 'width' to 'width.cutoff'
  dialog.dudi.display : labellicca: warning in s.label(eval(parse(text =
  paste(dudiname, "$co", sep = ""))), parse(text =
  tclvalue(xaxvar))[[1]], parse(text = tclvalue(yaxvar))[[1]], clab =
  0, cpoi = 2, add.plot = TRUE): partial argument match of 'clab' to
  'clabel'
  dialog.dudi.display : labellicca: warning in s.label(eval(parse(text =
  paste(dudiname, "$co", sep = ""))), parse(text =
  tclvalue(xaxvar))[[1]], parse(text = tclvalue(yaxvar))[[1]], clab =
  0, cpoi = 2, add.plot = TRUE): partial argument match of 'cpoi' to
  'cpoint'
  dialog.dudi.display : labellscca: warning in s.label(eval(parse(text =
  paste(dudiname, "$co", sep = ""))), parse(text =
  tclvalue(xaxvar))[[1]], parse(text = tclvalue(yaxvar))[[1]], clab =
  0, cpoi = 2, add.plot = TRUE): partial argument match of 'clab' to
  'clabel'
  dialog.dudi.display : labellscca: warning in s.label(eval(parse(text =
  paste(dudiname, "$co", sep = ""))), parse(text =
  tclvalue(xaxvar))[[1]], parse(text = tclvalue(yaxvar))[[1]], clab =
  0, cpoi = 2, add.plot = TRUE): partial argument match of 'cpoi' to
  'cpoint'
  dialog.dudi.fca : execcomp: warning in deparse(cmd, width = 256):
  partial argument match of 'width' to 'width.cutoff'
  dialog.dudi.fca : execcomp: warning in deparse(cmd, width = 500):
  partial argument match of 'width' to 'width.cutoff'
  dialog.dudi.fpca : execcomp: warning in deparse(cmd, width = 256):
  partial argument match of 'width' to 'width.cutoff'
  dialog.dudi.fpca : execcomp: warning in deparse(cmd, width = 500):
  partial argument match of 'width' to 'width.cutoff'
  dialog.dudi.mix : execcomp: warning in deparse(cmd, width = 256):
  partial argument match of 'width' to 'width.cutoff'
  dialog.dudi.mix : execcomp: warning in deparse(cmd, width = 500):
  partial argument match of 'width' to 'width.cutoff'
  dialog.dudi.nsc : execcomp: warning in deparse(cmd, width = 256):
  partial argument match of 'width' to 'width.cutoff'
  dialog.dudi.nsc : execcomp: warning in deparse(cmd, width = 500):
  partial argument match of 'width' to 'width.cutoff'
  dialog.dudi.pca : execcomp: warning in deparse(cmd, width = 256):
  partial argument match of 'width' to 'width.cutoff'
  dialog.dudi.pca : execcomp: warning in deparse(cmd, width = 500):
  partial argument match of 'width' to 'width.cutoff'
  dialog.dudi.pco : execcomp: warning in deparse(cmd, width = 256):
  partial argument match of 'width' to 'width.cutoff'
  dialog.dudi.pco : execcomp: warning in deparse(cmd, width = 500):
  partial argument match of 'width' to 'width.cutoff'
  dialog.pcaiv : execcomp: warning in deparse(cmd, width = 256): partial
  argument match of 'width' to 'width.cutoff'
  dialog.pcaiv : execcomp: warning in deparse(cmd, width = 500): partial
  argument match of 'width' to 'width.cutoff'
  dialog.pcaivortho : execcomp: warning in deparse(cmd, width = 256):
  partial argument match of 'width' to 'width.cutoff'
  dialog.pcaivortho : execcomp: warning in deparse(cmd, width = 500):
  partial argument match of 'width' to 'width.cutoff'
  dialog.s.arrow : drawgraph: warning in deparse(cmd, width = 500):
  partial argument match of 'width' to 'width.cutoff'
  dialog.s.chull : build: warning in eval(parse(text = paste("rep(1,
  length(levels(", facstr, ")))", sep = "")), env = .GlobalEnv):
  partial argument match of 'env' to 'envir'
  dialog.s.chull : drawgraph: warning in deparse(cmd, width = 500):
  partial argument match of 'width' to 'width.cutoff'
  dialog.s.class : build: warning in eval(parse(text = paste("rep(1,
  length(", facstr, "))", sep = "")), env = .GlobalEnv): partial
  argument match of 'env' to 'envir'
  dialog.s.class : build: warning in eval(parse(text = paste("rep(1,
  length(levels(", facstr, ")))", sep = "")), env = .GlobalEnv):
  partial argument match of 'env' to 'envir'
  dialog.s.class : drawgraph: warning in deparse(cmd, width = 500):
  partial argument match of 'width' to 'width.cutoff'
  dialog.s.corcircle : drawgraph: warning in deparse(cmd, width = 500):
  partial argument match of 'width' to 'width.cutoff'
  dialog.s.label : drawgraph: warning in deparse(cmd, width = 500):
  partial argument match of 'width' to 'width.cutoff'
  dialog.s.match : drawgraph: warning in deparse(cmd, width = 500):
  partial argument match of 'width' to 'width.cutoff'
  dialog.s.value : drawgraph: warning in deparse(cmd, width = 500):
  partial argument match of 'width' to 'width.cutoff'
  dialog.within : execcomp: warning in deparse(cmd, width = 256): partial
  argument match of 'width' to 'width.cutoff'
  dialog.within : execcomp: warning in deparse(cmd, width = 500): partial
  argument match of 'width' to 'width.cutoff'
  explore : outgraph.explore : savefic: warning in png(file = filename,
  width = width, height = height): partial argument match of 'file' to
  'filename'
  explore : outgraph.explore : savefic: warning in jpeg(file = filename,
  width = width, height = height): partial argument match of 'file' to
  'filename'
  ordiClust : outgraphOrdiClust : savefic: warning in png(file =
  filename, width = width, height = height): partial argument match of
  'file' to 'filename'
  ordiClust : outgraphOrdiClust : savefic: warning in jpeg(file =
  filename, width = width, height = height): partial argument match of
  'file' to 'filename'
  outgraph : savefic: warning in png(file = filename, width = width,
  height = height): partial argument match of 'file' to 'filename'
  outgraph : savefic: warning in jpeg(file = filename, width = width,
  height = height): partial argument match of 'file' to 'filename'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [1s/1s] OK
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/ade4TkGUI.Rcheck/00check.log’
  for details.