• using R Under development (unstable) (2012-05-19 r59366)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘SweaveListingUtils/DESCRIPTION’ ... OK
• this is package ‘SweaveListingUtils’ version ‘0.5.5’
• package encoding: latin1
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘SweaveListingUtils’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [1s/2s] OK
• checking differences from ‘SweaveListingUtils-Ex.Rout’ to ‘SweaveListingUtils-Ex.Rout.save’ ...
  2c2
  < :startupmsg> Utilities for start-up messages (version 0.7.2)
  ---
  > :startupmsg> Utilities for start-up messages (version 0.7.3)
  400c400
  < \newcommand{\pkgversion}{{\tt 2.3.3}}
  ---
  > \newcommand{\pkgversion}{{\tt 2.3.4}}
  443,496c443,495
  < reorder,rect.hclust,read.ftable,rWishart,r2dtable,%
  < quasipoisson,quasibinomial,quantile.default,quade.test,qqnorm.default,%
  < qbirthday,prop.trend.test,prop.test,promax,printCoefmat,%
  < print.ts,print.terms,print.logLik,print.lm,print.integrate,%
  < print.infl,print.glm,print.ftable,print.formula,print.family,%
  < print.density,print.coefmat,print.anova,princomp,predict.poly,%
  < predict.mlm,predict.lm,predict.glm,prcomp,ppr,%
  < power.t.test,power.prop.test,power.anova.test,polym,poisson.test,%
  < plot.ts,plot.stepfun,plot.spec.phase,plot.spec.coherency,plot.spec,%
  < plot.mlm,plot.lm,plot.ecdf,plot.density,plot.TukeyHSD,%
  < plclust,pbirthday,pairwise.wilcox.test,pairwise.table,pairwise.t.test,%
  < pairwise.prop.test,pacf,p.adjust.methods,p.adjust,order.dendrogram,%
  < optimHess,oneway.test,numericDeriv,nobs,nls.control,%
  < nls,nlminb,naresid,naprint,napredict,%
  < na.pass,na.omit,na.fail,na.exclude,na.contiguous,%
  < na.action,mood.test,monthplot,model.weights,model.tables,%
  < model.response,model.offset,model.matrix.lm,model.matrix.default,model.matrix,%
  < model.frame.lm,model.frame.glm,model.frame.default,model.frame.aovlist,model.frame,%
  < model.extract,medpolish,median.default,mcnemar.test,mauchly.test,%
  < mauchley.test,mantelhaen.test,manova,makepredictcall,makeARIMA,%
  < make.link,ls.print,ls.diag,logLik,loess.smooth,%
  < loess.control,loess,loadings,lm.wfit.null,lm.wfit,%
  < lm.influence,lm.fit.null,lm.fit,lines.ts,line,%
  < lag.plot,lag,ksmooth,ks.test,kruskal.test,%
  < knots,kmeans,kernel,kernapply,isoreg,%
  < is.tskernel,is.ts,is.stepfun,is.mts,is.leaf,%
  < is.empty.model,inverse.gaussian,interaction.plot,integrate,influence.measures,%
  < heatmap,hclust,hatvalues.lm,hatvalues,glm.fit.null,%
  < glm.fit,glm.control,get_all_vars,getInitial,getCall,%
  < friedman.test,fligner.test,fitted.values,fisher.test,filter,%
  < factor.scope,factanal,expand.model.frame,estVar,embed,%
  < eff.aovlist,ecdf,dummy.coef,drop.terms,drop.scope,%
  < dmultinom,dist,diffinv,diff.ts,dfbeta,%
  < df.residual,df.kernel,deriv3.formula,deriv3.default,deriv3,%
  < deriv.formula,deriv.default,density.default,dendrapply,delete.response,%
  < decompose,cutree,cpgram,cov2cor,cov.wt,%
  < cor.test,cophenetic,cooks.distance,contrasts<-,contr.treatment,%
  < contr.sum,contr.poly,contr.helmert,contr.SAS,constrOptim,%
  < confint.default,confint,complete.cases,cmdscale,clearNames,%
  < chisq.test,ccf,case.names,cancor,bw.ucv,%
  < bw.nrd0,bw.nrd,bw.bcv,bw.SJ,biplot,%
  < binom.test,bartlett.test,bandwidth.kernel,asOneSidedFormula,as.ts,%
  < as.stepfun,as.hclust,as.formula,as.dist,as.dendrogram,%
  < arima0.diag,arima0,arima.sim,arima,ar.yw,%
  < ar.ols,ar.mle,ar.burg,ar,ansari.test,%
  < anovalist.lm,anova.mlm,anova.lmlist,anova.lm,anova.glmlist,%
  < anova.glm,aggregate.ts,aggregate.default,aggregate.data.frame,addmargins,%
  < add.scope,acf2AR,acf,TukeyHSD.aov,TukeyHSD,%
  < StructTS,SSweibull,SSmicmen,SSlogis,SSgompertz,%
  < SSfpl,SSfol,SSbiexp,SSasympOrig,SSasympOff,%
  < SSasymp,SSD,PP.test,NLSstRtAsymptote,NLSstLfAsymptote,%
  < NLSstClosestX,NLSstAsymptotic,KalmanSmooth,KalmanRun,KalmanLike,%
  < KalmanForecast,HoltWinters,Box.test,BIC,ARMAtoMA,%
  < ARMAacf,AIC%
  ---
  > reorder,rect.hclust,read.ftable,r2dtable,quasipoisson,%
  > quasibinomial,quantile.default,quade.test,qqnorm.default,qbirthday,%
  > prop.trend.test,prop.test,promax,printCoefmat,print.ts,%
  > print.terms,print.logLik,print.lm,print.integrate,print.infl,%
  > print.glm,print.ftable,print.formula,print.family,print.density,%
  > print.coefmat,print.anova,princomp,predict.poly,predict.mlm,%
  > predict.lm,predict.glm,prcomp,ppr,power.t.test,%
  > power.prop.test,power.anova.test,polym,poisson.test,plot.ts,%
  > plot.stepfun,plot.spec.phase,plot.spec.coherency,plot.spec,plot.mlm,%
  > plot.lm,plot.ecdf,plot.density,plot.TukeyHSD,plclust,%
  > pbirthday,pairwise.wilcox.test,pairwise.table,pairwise.t.test,pairwise.prop.test,%
  > pacf,p.adjust.methods,p.adjust,order.dendrogram,oneway.test,%
  > numericDeriv,nobs,nls.control,nls,nlminb,%
  > naresid,naprint,napredict,na.pass,na.omit,%
  > na.fail,na.exclude,na.contiguous,na.action,mood.test,%
  > monthplot,model.weights,model.tables,model.response,model.offset,%
  > model.matrix.lm,model.matrix.default,model.matrix,model.frame.lm,model.frame.glm,%
  > model.frame.default,model.frame.aovlist,model.frame,model.extract,medpolish,%
  > median.default,mcnemar.test,mauchly.test,mauchley.test,mantelhaen.test,%
  > manova,makepredictcall,makeARIMA,make.link,ls.print,%
  > ls.diag,logLik,loess.smooth,loess.control,loess,%
  > loadings,lm.wfit.null,lm.wfit,lm.influence,lm.fit.null,%
  > lm.fit,lines.ts,line,lag.plot,lag,%
  > ksmooth,ks.test,kruskal.test,knots,kmeans,%
  > kernel,kernapply,isoreg,is.tskernel,is.ts,%
  > is.stepfun,is.mts,is.leaf,is.empty.model,inverse.gaussian,%
  > interaction.plot,integrate,influence.measures,heatmap,hclust,%
  > hatvalues.lm,hatvalues,glm.fit.null,glm.fit,glm.control,%
  > get_all_vars,getInitial,getCall,friedman.test,fligner.test,%
  > fitted.values,fisher.test,filter,factor.scope,factanal,%
  > expand.model.frame,estVar,embed,eff.aovlist,ecdf,%
  > dummy.coef,drop.terms,drop.scope,dmultinom,dist,%
  > diffinv,diff.ts,dfbeta,df.residual,df.kernel,%
  > deriv3.formula,deriv3.default,deriv3,deriv.formula,deriv.default,%
  > density.default,dendrapply,delete.response,decompose,cutree,%
  > cpgram,cov2cor,cov.wt,cor.test,cophenetic,%
  > cooks.distance,contrasts<-,contr.treatment,contr.sum,contr.poly,%
  > contr.helmert,contr.SAS,constrOptim,confint.default,confint,%
  > complete.cases,cmdscale,clearNames,chisq.test,ccf,%
  > case.names,cancor,bw.ucv,bw.nrd0,bw.nrd,%
  > bw.bcv,bw.SJ,biplot,binom.test,bartlett.test,%
  > bandwidth.kernel,asOneSidedFormula,as.ts,as.stepfun,as.hclust,%
  > as.formula,as.dist,as.dendrogram,arima0.diag,arima0,%
  > arima.sim,arima,ar.yw,ar.ols,ar.mle,%
  > ar.burg,ar,ansari.test,anovalist.lm,anova.mlm,%
  > anova.lmlist,anova.lm,anova.glmlist,anova.glm,aggregate.ts,%
  > aggregate.default,aggregate.data.frame,addmargins,add.scope,acf2AR,%
  > acf,TukeyHSD.aov,TukeyHSD,StructTS,SSweibull,%
  > SSmicmen,SSlogis,SSgompertz,SSfpl,SSfol,%
  > SSbiexp,SSasympOrig,SSasympOff,SSasymp,SSD,%
  > PP.test,NLSstRtAsymptote,NLSstLfAsymptote,NLSstClosestX,NLSstAsymptotic,%
  > KalmanSmooth,KalmanRun,KalmanLike,KalmanForecast,HoltWinters,%
  > Box.test,BIC,ARMAtoMA,ARMAacf,AIC%
  560,577c559,575
  < head.matrix,head,globalVariables,glob2rx,getTxtProgressBar,%
  < getSrcref,getSrcLocation,getSrcFilename,getSrcDirectory,getS3method,%
  < getFromNamespace,getCRANmirrors,getAnywhere,formatUL,formatOL,%
  < flush.console,fixInNamespace,findLineNum,file_test,file.edit,%
  < dump.frames,download.packages,download.file,de.setup,de.restore,%
  < de.ncols,data.entry,create.post,count.fields,contrib.url,%
  < compareVersion,combn,close.socket,citation,citHeader,%
  < citFooter,citEntry,chooseCRANmirror,chooseBioCmirror,checkCRAN,%
  < capture.output,bug.report,browseVignettes,browseURL,browseEnv,%
  < bibentry,available.packages,assignInNamespace,assignInMyNamespace,aspell_write_personal_dictionary_file,%
  < aspell_package_vignettes,aspell_package_Rd_files,aspell,as.roman,as.relistable,%
  < as.personList,as.person,argsAnywhere,aregexec,alarm,%
  < adist,View,URLencode,URLdecode,SweaveSyntaxNoweb,%
  < SweaveSyntaxLatex,SweaveSyntConv,SweaveHooks,Sweave,Stangle,%
  < RweaveTryStop,RweaveLatexWritedoc,RweaveLatexSetup,RweaveLatexOptions,RweaveLatexFinish,%
  < RweaveLatex,RweaveEvalWithOpt,RweaveChunkPrefix,RtangleWritedoc,RtangleSetup,%
  < Rtangle,Rprofmem,Rprof,RSiteSearch,RShowDoc,%
  < CRAN.packages%
  ---
  > head.matrix,head,glob2rx,getTxtProgressBar,getSrcref,%
  > getSrcLocation,getSrcFilename,getSrcDirectory,getS3method,getFromNamespace,%
  > getCRANmirrors,getAnywhere,formatUL,formatOL,flush.console,%
  > fixInNamespace,findLineNum,file_test,file.edit,dump.frames,%
  > download.packages,download.file,de.setup,de.restore,de.ncols,%
  > data.entry,create.post,count.fields,contrib.url,compareVersion,%
  > combn,close.socket,citation,citHeader,citFooter,%
  > citEntry,chooseCRANmirror,chooseBioCmirror,checkCRAN,capture.output,%
  > bug.report,browseVignettes,browseURL,browseEnv,bibentry,%
  > available.packages,assignInNamespace,aspell_write_personal_dictionary_file,aspell_package_vignettes,aspell_package_Rd_files,%
  > aspell,as.roman,as.relistable,as.personList,as.person,%
  > argsAnywhere,aregexec,alarm,adist,View,%
  > URLencode,URLdecode,SweaveSyntaxNoweb,SweaveSyntaxLatex,SweaveSyntConv,%
  > SweaveHooks,Sweave,Stangle,RweaveTryStop,RweaveLatexWritedoc,%
  > RweaveLatexSetup,RweaveLatexOptions,RweaveLatexFinish,RweaveLatex,RweaveEvalWithOpt,%
  > RweaveChunkPrefix,RtangleWritedoc,RtangleSetup,Rtangle,Rprofmem,%
  > Rprof,RSiteSearch,RShowDoc,CRAN.packages%
  617,652c615,649
  < setLoadActions,setLoadAction,setIs,setGroupGeneric,setGenericImplicit,%
  < setGeneric,setDataPart,setClassUnion,setClass,setAs,%
  < sessionData,selectSuperClasses,selectMethod,seemsS4Object,sealClass,%
  < resetGeneric,resetClass,requireMethods,representation,removeMethodsObject,%
  < removeMethods,removeMethod,removeGeneric,removeClass,rematchDefinition,%
  < registerImplicitGenerics,reconcilePropertiesAndPrototype,rbind2,prototype,promptMethods,%
  < promptClass,prohibitGeneric,possibleExtends,packageSlot<-,packageSlot,%
  < newEmptyObject,newClassRepresentation,newBasic,multipleClasses,mlistMetaName,%
  < missingArg,methodsPackageMetaName,methodSignatureMatrix,method.skeleton,metaNameUndo,%
  < mergeMethods,matchSignature,makeStandardGeneric,makePrototypeFromClassDef,makeMethodsList,%
  < makeGeneric,makeExtends,makeClassRepresentation,loadMethod,listFromMlist,%
  < listFromMethods,linearizeMlist,languageEl<-,languageEl,isXS3Class,%
  < isVirtualClass,isSealedMethod,isSealedClass,isGroup,isGrammarSymbol,%
  < isGeneric,isClassUnion,isClassDef,isClass,insertSource,%
  < insertMethod,initialize,initRefFields,initFieldArgs,inheritedSlotNames,%
  < implicitGeneric,hasMethods,hasMethod,hasLoadAction,hasArg,%
  < getVirtual,getValidity,getSubclasses,getSlots,getRefClass,%
  < getPrototype,getProperties,getPackageName,getMethodsMetaData,getMethodsForDispatch,%
  < getMethods,getMethod,getLoadActions,getGroupMembers,getGroup,%
  < getGenerics,getGeneric,getFunction,getExtends,getDataPart,%
  < getClasses,getClassPackage,getClassName,getClassDef,getClass,%
  < getAllSuperClasses,getAllMethods,getAccess,generic.skeleton,functionBody<-,%
  < functionBody,formalArgs,fixPre1.8,findUnique,findMethods,%
  < findMethodSignatures,findMethod,findFunction,findClass,finalDefaultMethod,%
  < extends,existsMethod,existsFunction,evalqOnLoad,evalSource,%
  < evalOnLoad,emptyMethodsList,empty.dump,elNamed<-,elNamed,%
  < el<-,el,dumpMethods,dumpMethod,doPrimitiveMethod,%
  < defaultPrototype,defaultDumpName,conformMethod,completeSubclasses,completeExtends,%
  < completeClassDefinition,coerce<-,coerce,classesToAM,className,%
  < classMetaName,classLabel,checkSlotAssignment,cbind2,canCoerce,%
  < callNextMethod,callGeneric,cacheMethod,cacheMetaData,cacheGenericsMetaData,%
  < body<-,balanceMethodsList,assignMethodsMetaData,assignClassDef,asMethodDefinition,%
  < as<-,allNames,allGenerics,addNextMethod,Summary,%
  < SignatureMethod,S3Part<-,S3Part,S3Class<-,S3Class,%
  < Quote,MethodsListSelect,MethodsList,MethodAddCoerce,Math2,%
  < Logic,Complex,Compare,Arith%
  ---
  > setIs,setGroupGeneric,setGenericImplicit,setGeneric,setDataPart,%
  > setClassUnion,setClass,setAs,sessionData,selectSuperClasses,%
  > selectMethod,seemsS4Object,sealClass,resetGeneric,resetClass,%
  > requireMethods,representation,removeMethodsObject,removeMethods,removeMethod,%
  > removeGeneric,removeClass,rematchDefinition,registerImplicitGenerics,reconcilePropertiesAndPrototype,%
  > rbind2,prototype,promptMethods,promptClass,prohibitGeneric,%
  > possibleExtends,packageSlot<-,packageSlot,newEmptyObject,newClassRepresentation,%
  > newBasic,multipleClasses,mlistMetaName,missingArg,methodsPackageMetaName,%
  > methodSignatureMatrix,method.skeleton,metaNameUndo,mergeMethods,matchSignature,%
  > makeStandardGeneric,makePrototypeFromClassDef,makeMethodsList,makeGeneric,makeExtends,%
  > makeClassRepresentation,loadMethod,listFromMlist,listFromMethods,linearizeMlist,%
  > languageEl<-,languageEl,isXS3Class,isVirtualClass,isSealedMethod,%
  > isSealedClass,isGroup,isGrammarSymbol,isGeneric,isClassUnion,%
  > isClassDef,isClass,insertSource,insertMethod,initialize,%
  > initRefFields,initFieldArgs,inheritedSlotNames,implicitGeneric,hasMethods,%
  > hasMethod,hasArg,getVirtual,getValidity,getSubclasses,%
  > getSlots,getRefClass,getPrototype,getProperties,getPackageName,%
  > getMethodsMetaData,getMethodsForDispatch,getMethods,getMethod,getGroupMembers,%
  > getGroup,getGenerics,getGeneric,getFunction,getExtends,%
  > getDataPart,getClasses,getClassPackage,getClassName,getClassDef,%
  > getClass,getAllSuperClasses,getAllMethods,getAccess,generic.skeleton,%
  > functionBody<-,functionBody,formalArgs,fixPre1.8,findUnique,%
  > findMethods,findMethodSignatures,findMethod,findFunction,findClass,%
  > finalDefaultMethod,extends,existsMethod,existsFunction,evalSource,%
  > emptyMethodsList,empty.dump,elNamed<-,elNamed,el<-,%
  > el,dumpMethods,dumpMethod,doPrimitiveMethod,defaultPrototype,%
  > defaultDumpName,conformMethod,completeSubclasses,completeExtends,completeClassDefinition,%
  > coerce<-,coerce,classesToAM,className,classMetaName,%
  > classLabel,checkSlotAssignment,cbind2,canCoerce,callNextMethod,%
  > callGeneric,cacheMethod,cacheMetaData,cacheGenericsMetaData,body<-,%
  > balanceMethodsList,assignMethodsMetaData,assignClassDef,asMethodDefinition,as<-,%
  > allNames,allGenerics,addNextMethod,Summary,SignatureMethod,%
  > S3Part<-,S3Part,S3Class<-,S3Class,Quote,%
  > MethodsListSelect,MethodsList,MethodAddCoerce,Math2,Logic,%
  > Complex,Compare,Arith%
  661,698c658,696
  < xtfrm,xpdrows.data.frame,xor.octmode,xor.hexmode,xlength<-,%
  < xlength,writeLines,writeChar,writeBin,write.dcf,%
  < within.list,within.data.frame,within,withVisible,withRestarts,%
  < withCallingHandlers,with.default,with,which.min,which.max,%
  < weekdays.POSIXt,weekdays.Date,weekdays,version,vapply,%
  < utf8ToInt,upper.tri,unz,untracemem,unsplit,%
  < unserialize,unlockBinding,unloadNamespace,unix.time,units<-.difftime,%
  < units<-,units.difftime,units,unique.numeric_version,unique.matrix,%
  < unique.default,unique.data.frame,unique.array,unique.POSIXlt,tryCatch,%
  < truncate.connection,truncate,trunc.POSIXt,trunc.Date,transform.default,%
  < transform.data.frame,tracingState,tracemem,toupper,topenv,%
  < tolower,toString.default,toString,textConnectionValue,textConnection,%
  < testPlatformEquivalence,tempdir,tcrossprod,taskCallbackManager,t.default,%
  < t.data.frame,system2,system.time,system.file,sys.status,%
  < sys.source,sys.save.image,sys.parents,sys.parent,sys.on.exit,%
  < sys.nframe,sys.load.image,sys.function,sys.frames,sys.frame,%
  < sys.calls,sys.call,suppressWarnings,suppressPackageStartupMessages,suppressMessages,%
  < summary.table,summary.srcref,summary.srcfile,summary.matrix,summary.factor,%
  < summary.default,summary.data.frame,summary.connection,summary.POSIXlt,summary.POSIXct,%
  < summary.Date,substring<-,substr<-,subset.matrix,subset.default,%
  < subset.data.frame,strwrap,strtrim,strtoi,strptime,%
  < strftime,storage.mode<-,storage.mode,stopifnot,stdout,%
  < stdin,stderr,standardGeneric,srcref,srcfilecopy,%
  < srcfilealias,srcfile,sprintf,split<-.default,split<-.data.frame,%
  < split<-,split.default,split.data.frame,split.POSIXct,split.Date,%
  < sort.list,sort.int,sort.default,sort.POSIXlt,solve.qr,%
  < solve.default,socketSelect,socketConnection,slice.index,sink.number,%
  < simplify2array,simpleWarning,simpleMessage,simpleError,simpleCondition,%
  < signalCondition,showConnections,shQuote,setTimeLimit,setSessionTimeLimit,%
  < setNamespaceInfo,setHook,set.seed,serialize,seq_len,%
  < seq_along,seq.int,seq.default,seq.POSIXt,seq.Date,%
  < seek.connection,seek,scale.default,saveRDS,save.image,%
  < sample.int,sQuote,rowsum.default,rowsum.data.frame,rownames<-,%
  < rowSums,rowMeans,row.names<-.default,row.names<-.data.frame,row.names<-,%
  < row.names.default,row.names.data.frame,row.names,round.POSIXt,round.Date,%
  < rev.default,retracemem,restartFormals,restartDescription,requireNamespace,%
  < replicate,rep.numeric_version,rep.int,rep.factor,rep.POSIXlt,%
  < rep.POSIXct,rep.Date,removeTaskCallback,regmatches<-,regmatches,%
  ---
  > xtfrm,xpdrows.data.frame,xor.octmode,xor.hexmode,writeLines,%
  > writeChar,writeBin,write.table0,write.dcf,within.list,%
  > within.data.frame,within,withVisible,withRestarts,withCallingHandlers,%
  > with.default,with,which.min,which.max,weekdays.POSIXt,%
  > weekdays.Date,weekdays,version,vapply,utf8ToInt,%
  > upper.tri,unz,untracemem,unsplit,unserialize,%
  > unlockBinding,unloadNamespace,unix.time,units<-.difftime,units<-,%
  > units.difftime,units,unique.numeric_version,unique.matrix,unique.default,%
  > unique.data.frame,unique.array,unique.POSIXlt,tryCatch,truncate.connection,%
  > truncate,trunc.POSIXt,trunc.Date,transform.default,transform.data.frame,%
  > tracingState,tracemem,toupper,topenv,tolower,%
  > toString.default,toString,textConnectionValue,textConnection,testPlatformEquivalence,%
  > tempdir,tcrossprod,taskCallbackManager,t.default,t.data.frame,%
  > system2,system.time,system.file,sys.status,sys.source,%
  > sys.save.image,sys.parents,sys.parent,sys.on.exit,sys.nframe,%
  > sys.load.image,sys.function,sys.frames,sys.frame,sys.calls,%
  > sys.call,symbol.For,symbol.C,suppressWarnings,suppressPackageStartupMessages,%
  > suppressMessages,summary.table,summary.srcref,summary.srcfile,summary.matrix,%
  > summary.factor,summary.default,summary.data.frame,summary.connection,summary.POSIXlt,%
  > summary.POSIXct,summary.Date,substring<-,substr<-,subset.matrix,%
  > subset.default,subset.data.frame,strwrap,strtrim,strtoi,%
  > strptime,strftime,storage.mode<-,storage.mode,stopifnot,%
  > stdout,stdin,stderr,standardGeneric,srcref,%
  > srcfilecopy,srcfilealias,srcfile,sprintf,split<-.default,%
  > split<-.data.frame,split<-,split.default,split.data.frame,split.POSIXct,%
  > split.Date,source.url,sort.list,sort.int,sort.default,%
  > sort.POSIXlt,solve.qr,solve.default,socketSelect,socketConnection,%
  > slice.index,sink.number,simplify2array,simpleWarning,simpleMessage,%
  > simpleError,simpleCondition,signalCondition,showConnections,shQuote,%
  > setTimeLimit,setSessionTimeLimit,setNamespaceInfo,setHook,setCConverterStatus,%
  > set.seed,serialize,seq_len,seq_along,seq.int,%
  > seq.default,seq.POSIXt,seq.Date,seek.connection,seek,%
  > scan.url,scale.default,saveRDS,save.image,sample.int,%
  > sQuote,rowsum.default,rowsum.data.frame,rownames<-,rowSums,%
  > rowMeans,row.names<-.default,row.names<-.data.frame,row.names<-,row.names.default,%
  > row.names.data.frame,row.names,round.POSIXt,round.Date,rev.default,%
  > retracemem,restartFormals,restartDescription,requireNamespace,replicate,%
  > rep.numeric_version,rep.int,rep.factor,rep.POSIXlt,rep.POSIXct,%
  > rep.Date,removeTaskCallback,removeCConverter,regmatches<-,regmatches,%
  700,755c698,754
  < readRDS,readLines,readChar,readBin,read.dcf,%
  < rcond,rbind.data.frame,rawToChar,rawToBits,rawShift,%
  < rawConnectionValue,rawConnection,raw,rapply,range.default,%
  < quarters.POSIXt,quarters.Date,quarters,qr.solve,qr.resid,%
  < qr.qy,qr.qty,qr.fitted,qr.default,qr.coef,%
  < qr.X,qr.R,qr.Q,pushBackLength,pushBack,%
  < psigamma,provideDimnames,prop.table,proc.time,print.warnings,%
  < print.table,print.summaryDefault,print.summary.table,print.srcref,print.srcfile,%
  < print.simple.list,print.rle,print.restart,print.proc_time,print.packageInfo,%
  < print.octmode,print.numeric_version,print.noquote,print.listof,print.libraryIQR,%
  < print.hexmode,print.function,print.factor,print.difftime,print.default,%
  < print.data.frame,print.connection,print.condition,print.by,print.POSIXlt,%
  < print.POSIXct,print.NativeRoutineList,print.Date,print.DLLRegisteredRoutines,print.DLLInfoList,%
  < print.DLLInfo,print.AsIs,prettyNum,pretty.default,pos.to.env,%
  < pmin.int,pmax.int,pipe,pi,path.package,%
  < path.expand,paste0,parseNamespaceFile,parent.frame,parent.env<-,%
  < parent.env,package_version,packageStartupMessage,packageHasNamespace,packageEvent,%
  < packBits,open.srcfilecopy,open.srcfilealias,open.srcfile,open.connection,%
  < open,on.exit,oldClass<-,oldClass,nzchar,%
  < numeric_version,normalizePath,norm,ngettext,new.env,%
  < namespaceImportMethods,namespaceImportFrom,namespaceImportClasses,namespaceImport,namespaceExport,%
  < names<-.POSIXlt,names<-,names.POSIXlt,mostattributes<-,months.POSIXt,%
  < months.Date,months,month.name,month.abb,mode<-,%
  < mget,message,merge.default,merge.data.frame,memory.profile,%
  < memDecompress,memCompress,mem.limits,mean.difftime,mean.default,%
  < mean.data.frame,mean.POSIXlt,mean.POSIXct,mean.Date,max.col,%
  < match.fun,match.call,match.arg,mat.or.vec,margin.table,%
  < mapply,manglePackageName,makeActiveBinding,make.unique,make.names,%
  < lower.tri,logb,lockEnvironment,lockBinding,loadingNamespaceInfo,%
  < loadedNamespaces,loadNamespace,list2env,list.files,list.dirs,%
  < library.dynam.unload,library.dynam,lfactorial,levels<-.factor,levels<-,%
  < levels.default,letters,length<-.factor,length<-,length.POSIXlt,%
  < lazyLoadDBfetch,lazyLoadDBexec,lazyLoad,labels.default,l10n_info,%
  < kappa.tri,kappa.qr,kappa.lm,kappa.default,julian.POSIXt,%
  < julian.Date,julian,isdebugged,isatty,isTRUE,%
  < isSymmetric.matrix,isSymmetric,isSeekable,isS4,isRestart,%
  < isOpen,isNamespace,isIncomplete,isBaseNamespace,is.vector,%
  < is.unsorted,is.table,is.symbol,is.single,is.recursive,%
  < is.real,is.raw,is.qr,is.primitive,is.pairlist,%
  < is.package_version,is.ordered,is.object,is.numeric_version,is.numeric.difftime,%
  < is.numeric.POSIXt,is.numeric.Date,is.numeric,is.null,is.nan,%
  < is.name,is.na<-.factor,is.na<-.default,is.na<-,is.na.numeric_version,%
  < is.na.data.frame,is.na.POSIXlt,is.na,is.matrix,is.logical,%
  < is.loaded,is.list,is.language,is.integer,is.infinite,%
  < is.function,is.finite,is.factor,is.expression,is.environment,%
  < is.element,is.double,is.data.frame,is.complex,is.character,%
  < is.call,is.atomic,is.array,is.R,invokeRestartInteractively,%
  < invokeRestart,inverse.rle,intToUtf8,intToBits,importIntoEnv,%
  < identity,identical,icuSetCollate,iconvlist,iconv,%
  < gzfile,gzcon,grepl,grepRaw,gregexpr,%
  < gettextf,gettext,getTaskCallbackNames,getSrcLines,getRversion,%
  < getNativeSymbolInfo,getNamespaceVersion,getNamespaceUsers,getNamespaceName,getNamespaceInfo,%
  < getNamespaceImports,getNamespaceExports,getNamespace,getLoadedDLLs,getHook,%
  < getExportedValue,getElement,getDLLRegisteredRoutines.character,getDLLRegisteredRoutines.DLLInfo,getDLLRegisteredRoutines,%
  < getConnection,getCallingDLLe,getCallingDLL,getAllConnections,gctorture2,%
  < gc.time,formatDL,format.summaryDefault,format.pval,format.packageInfo,%
  ---
  > readRDS,readLines,readChar,readBin,read.table.url,%
  > read.dcf,rcond,rbind.data.frame,rawToChar,rawToBits,%
  > rawShift,rawConnectionValue,rawConnection,raw,rapply,%
  > range.default,quarters.POSIXt,quarters.Date,quarters,qr.solve,%
  > qr.resid,qr.qy,qr.qty,qr.fitted,qr.default,%
  > qr.coef,qr.X,qr.R,qr.Q,pushBackLength,%
  > pushBack,psigamma,prop.table,proc.time,printNoClass,%
  > print.warnings,print.table,print.summaryDefault,print.summary.table,print.srcref,%
  > print.srcfile,print.simple.list,print.rle,print.restart,print.proc_time,%
  > print.packageInfo,print.octmode,print.numeric_version,print.noquote,print.listof,%
  > print.libraryIQR,print.hexmode,print.function,print.factor,print.difftime,%
  > print.default,print.data.frame,print.connection,print.condition,print.by,%
  > print.POSIXlt,print.POSIXct,print.NativeRoutineList,print.Date,print.DLLRegisteredRoutines,%
  > print.DLLInfoList,print.DLLInfo,print.AsIs,prettyNum,pretty.default,%
  > pos.to.env,pmin.int,pmax.int,pipe,pi,%
  > path.package,path.expand,parseNamespaceFile,parse.dcf,parent.frame,%
  > parent.env<-,parent.env,package_version,packageStartupMessage,packageHasNamespace,%
  > packageEvent,package.description,packBits,open.srcfilecopy,open.srcfilealias,%
  > open.srcfile,open.connection,open,on.exit,oldClass<-,%
  > oldClass,nzchar,numeric_version,normalizePath,norm,%
  > ngettext,new.env,namespaceImportMethods,namespaceImportFrom,namespaceImportClasses,%
  > namespaceImport,namespaceExport,names<-.POSIXlt,names<-,names.POSIXlt,%
  > mostattributes<-,months.POSIXt,months.Date,months,month.name,%
  > month.abb,mode<-,mget,message,merge.default,%
  > merge.data.frame,memory.profile,memDecompress,memCompress,mem.limits,%
  > mean.difftime,mean.default,mean.data.frame,mean.POSIXlt,mean.POSIXct,%
  > mean.Date,max.col,match.fun,match.call,match.arg,%
  > mat.or.vec,margin.table,mapply,manglePackageName,makeActiveBinding,%
  > make.unique,make.names,lower.tri,logb,lockEnvironment,%
  > lockBinding,loadingNamespaceInfo,loadedNamespaces,loadURL,loadNamespace,%
  > list2env,list.files,list.dirs,library.dynam.unload,library.dynam,%
  > lfactorial,levels<-.factor,levels<-,levels.default,letters,%
  > length<-.factor,length<-,length.POSIXlt,lazyLoadDBfetch,lazyLoadDBexec,%
  > lazyLoad,labels.default,l10n_info,kappa.tri,kappa.qr,%
  > kappa.lm,kappa.default,julian.POSIXt,julian.Date,julian,%
  > isdebugged,isatty,isTRUE,isSymmetric.matrix,isSymmetric,%
  > isSeekable,isS4,isRestart,isOpen,isNamespace,%
  > isIncomplete,isBaseNamespace,is.vector,is.unsorted,is.table,%
  > is.symbol,is.single,is.recursive,is.real,is.raw,%
  > is.qr,is.primitive,is.pairlist,is.package_version,is.ordered,%
  > is.object,is.numeric_version,is.numeric.difftime,is.numeric.POSIXt,is.numeric.Date,%
  > is.numeric,is.null,is.nan,is.name,is.na<-.factor,%
  > is.na<-.default,is.na<-,is.na.numeric_version,is.na.data.frame,is.na.POSIXlt,%
  > is.na,is.matrix,is.logical,is.loaded,is.list,%
  > is.language,is.integer,is.infinite,is.function,is.finite,%
  > is.factor,is.expression,is.environment,is.element,is.double,%
  > is.data.frame,is.complex,is.character,is.call,is.atomic,%
  > is.array,is.R,invokeRestartInteractively,invokeRestart,inverse.rle,%
  > intToUtf8,intToBits,importIntoEnv,identity,identical,%
  > icuSetCollate,iconvlist,iconv,gzfile,gzcon,%
  > grepl,grepRaw,gregexpr,gettextf,gettext,%
  > getTaskCallbackNames,getSrcLines,getRversion,getNumCConverters,getNativeSymbolInfo,%
  > getNamespaceVersion,getNamespaceUsers,getNamespaceName,getNamespaceInfo,getNamespaceImports,%
  > getNamespaceExports,getNamespace,getLoadedDLLs,getHook,getExportedValue,%
  > getElement,getDLLRegisteredRoutines.character,getDLLRegisteredRoutines.DLLInfo,getDLLRegisteredRoutines,getConnection,%
  > getCallingDLLe,getCallingDLL,getCConverterStatus,getCConverterDescriptions,getAllConnections,%
  > gctorture2,gc.time,formatDL,format.pval,format.packageInfo,%
  757,811c756,811
  < format.factor,format.difftime,format.default,format.data.frame,format.POSIXlt,%
  < format.POSIXct,format.Date,format.AsIs,formals<-,force,%
  < flush.connection,flush,findRestart,findPackageEnv,findInterval,%
  < find.package,file.symlink,file.show,file.rename,file.remove,%
  < file.path,file.link,file.info,file.exists,file.create,%
  < file.copy,file.choose,file.append,file.access,fifo,%
  < factorial,expm1,expand.grid,eval.parent,environmentName,%
  < environmentIsLocked,environment<-,env.profile,enquote,encodeString,%
  < enc2utf8,enc2native,emptyenv,eapply,dyn.unload,%
  < dyn.load,duplicated.numeric_version,duplicated.matrix,duplicated.default,duplicated.data.frame,%
  < duplicated.array,duplicated.POSIXlt,droplevels.factor,droplevels.data.frame,droplevels,%
  < do.call,dir.create,dimnames<-.data.frame,dimnames<-,dimnames.data.frame,%
  < dim<-,dim.data.frame,difftime,diff.default,diff.POSIXt,%
  < diff.Date,diag<-,determinant.matrix,determinant,det,%
  < delayedAssign,default.stringsAsFactors,debugonce,data.matrix,data.frame,%
  < data.class,dQuote,cut.default,cut.POSIXt,cut.Date,%
  < contributors,conditionMessage.condition,conditionMessage,conditionCall.condition,conditionCall,%
  < computeRestarts,comment<-,colnames<-,colSums,colMeans,%
  < closeAllConnections,close.srcfilealias,close.srcfile,close.connection,class<-,%
  < chol.default,check_tzones,chartr,charToRaw,char.expand,%
  < cbind.data.frame,casefold,capabilities,callCC,c.numeric_version,%
  < c.noquote,c.POSIXlt,c.POSIXct,c.Date,bzfile,%
  < by.default,by.data.frame,browserText,browserSetDebug,browserCondition,%
  < bquote,body<-,bindtextdomain,bindingIsLocked,bindingIsActive,%
  < baseenv,attributes<-,attr<-,attr.all.equal,attachNamespace,%
  < assign,asS4,asS3,asNamespace,as.vector.factor,%
  < as.vector,as.table.default,as.table,as.symbol,as.single.default,%
  < as.single,as.real,as.raw,as.qr,as.pairlist,%
  < as.package_version,as.ordered,as.octmode,as.numeric_version,as.numeric,%
  < as.null.default,as.null,as.name,as.matrix.noquote,as.matrix.default,%
  < as.matrix.data.frame,as.matrix.POSIXlt,as.matrix,as.logical.factor,as.logical,%
  < as.list.numeric_version,as.list.function,as.list.factor,as.list.environment,as.list.default,%
  < as.list.data.frame,as.list.POSIXct,as.list.Date,as.list,as.integer,%
  < as.hexmode,as.function.default,as.function,as.factor,as.expression.default,%
  < as.expression,as.environment,as.double.difftime,as.double.POSIXlt,as.double,%
  < as.difftime,as.data.frame.vector,as.data.frame.ts,as.data.frame.table,as.data.frame.raw,%
  < as.data.frame.ordered,as.data.frame.numeric_version,as.data.frame.numeric,as.data.frame.model.matrix,as.data.frame.matrix,%
  < as.data.frame.logical,as.data.frame.list,as.data.frame.integer,as.data.frame.factor,as.data.frame.difftime,%
  < as.data.frame.default,as.data.frame.data.frame,as.data.frame.complex,as.data.frame.character,as.data.frame.array,%
  < as.data.frame.POSIXlt,as.data.frame.POSIXct,as.data.frame.Date,as.data.frame.AsIs,as.data.frame,%
  < as.complex,as.character.srcref,as.character.octmode,as.character.numeric_version,as.character.hexmode,%
  < as.character.factor,as.character.error,as.character.default,as.character.condition,as.character.POSIXt,%
  < as.character.Date,as.character,as.call,as.array.default,as.array,%
  < as.POSIXlt.numeric,as.POSIXlt.factor,as.POSIXlt.default,as.POSIXlt.dates,as.POSIXlt.date,%
  < as.POSIXlt.character,as.POSIXlt.POSIXct,as.POSIXlt.Date,as.POSIXlt,as.POSIXct.numeric,%
  < as.POSIXct.default,as.POSIXct.dates,as.POSIXct.date,as.POSIXct.POSIXlt,as.POSIXct.Date,%
  < as.POSIXct,as.Date.numeric,as.Date.factor,as.Date.default,as.Date.dates,%
  < as.Date.date,as.Date.character,as.Date.POSIXlt,as.Date.POSIXct,as.Date,%
  < arrayInd,aperm.table,aperm.default,anyDuplicated.matrix,anyDuplicated.default,%
  < anyDuplicated.data.frame,anyDuplicated.array,anyDuplicated,all.vars,all.names,%
  < all.equal.raw,all.equal.numeric,all.equal.list,all.equal.language,all.equal.formula,%
  < all.equal.factor,all.equal.default,all.equal.character,all.equal.POSIXct,all.equal,%
  < agrep,addTaskCallback,addNA,Vectorize,T,%
  < Sys.which,Sys.unsetenv,Sys.umask,Sys.timezone,Sys.time,%
  < Sys.sleep,Sys.setlocale,Sys.setenv,Sys.setFileTime,Sys.readlink,%
  ---
  > format.factor,format.difftime,format.default,format.data.frame,format.char,%
  > format.POSIXlt,format.POSIXct,format.Date,format.AsIs,formals<-,%
  > force,flush.connection,flush,findRestart,findPackageEnv,%
  > findInterval,find.package,file.symlink,file.show,file.rename,%
  > file.remove,file.path,file.link,file.info,file.exists,%
  > file.create,file.copy,file.choose,file.append,file.access,%
  > fifo,factorial,expm1,expand.grid,eval.parent,%
  > environmentName,environmentIsLocked,environment<-,env.profile,enquote,%
  > encodeString,enc2utf8,enc2native,emptyenv,eapply,%
  > dyn.unload,dyn.load,duplicated.numeric_version,duplicated.matrix,duplicated.default,%
  > duplicated.data.frame,duplicated.array,duplicated.POSIXlt,droplevels.factor,droplevels.data.frame,%
  > droplevels,do.call,dir.create,dimnames<-.data.frame,dimnames<-,%
  > dimnames.data.frame,dim<-,dim.data.frame,difftime,diff.default,%
  > diff.POSIXt,diff.Date,diag<-,determinant.matrix,determinant,%
  > det,delayedAssign,default.stringsAsFactors,debugonce,data.matrix,%
  > data.frame,data.class,dQuote,cut.default,cut.POSIXt,%
  > cut.Date,contributors,conditionMessage.condition,conditionMessage,conditionCall.condition,%
  > conditionCall,computeRestarts,comment<-,colnames<-,colSums,%
  > colMeans,codes<-,codes.ordered,codes.factor,closeAllConnections,%
  > close.srcfilealias,close.srcfile,close.connection,class<-,chol.default,%
  > check_tzones,chartr,charToRaw,char.expand,cbind.data.frame,%
  > casefold,capabilities,callCC,c.numeric_version,c.noquote,%
  > c.POSIXlt,c.POSIXct,c.Date,bzfile,by.default,%
  > by.data.frame,browserText,browserSetDebug,browserCondition,bquote,%
  > body<-,bindtextdomain,bindingIsLocked,bindingIsActive,baseenv,%
  > attributes<-,attr<-,attr.all.equal,attachNamespace,assign,%
  > asS4,asS3,asNamespace,as.vector.factor,as.vector,%
  > as.table.default,as.table,as.symbol,as.single.default,as.single,%
  > as.real,as.raw,as.qr,as.pairlist,as.package_version,%
  > as.ordered,as.octmode,as.numeric_version,as.numeric,as.null.default,%
  > as.null,as.name,as.matrix.noquote,as.matrix.default,as.matrix.data.frame,%
  > as.matrix.POSIXlt,as.matrix,as.logical.factor,as.logical,as.list.numeric_version,%
  > as.list.function,as.list.factor,as.list.environment,as.list.default,as.list.data.frame,%
  > as.list.POSIXct,as.list.Date,as.list,as.integer,as.hexmode,%
  > as.function.default,as.function,as.factor,as.expression.default,as.expression,%
  > as.environment,as.double.difftime,as.double.POSIXlt,as.double,as.difftime,%
  > as.data.frame.vector,as.data.frame.ts,as.data.frame.table,as.data.frame.raw,as.data.frame.ordered,%
  > as.data.frame.numeric_version,as.data.frame.numeric,as.data.frame.model.matrix,as.data.frame.matrix,as.data.frame.logical,%
  > as.data.frame.list,as.data.frame.integer,as.data.frame.factor,as.data.frame.difftime,as.data.frame.default,%
  > as.data.frame.data.frame,as.data.frame.complex,as.data.frame.character,as.data.frame.array,as.data.frame.POSIXlt,%
  > as.data.frame.POSIXct,as.data.frame.Date,as.data.frame.AsIs,as.data.frame,as.complex,%
  > as.character.srcref,as.character.octmode,as.character.numeric_version,as.character.hexmode,as.character.factor,%
  > as.character.error,as.character.default,as.character.condition,as.character.POSIXt,as.character.Date,%
  > as.character,as.call,as.array.default,as.array,as.POSIXlt.numeric,%
  > as.POSIXlt.factor,as.POSIXlt.default,as.POSIXlt.dates,as.POSIXlt.date,as.POSIXlt.character,%
  > as.POSIXlt.POSIXct,as.POSIXlt.Date,as.POSIXlt,as.POSIXct.numeric,as.POSIXct.default,%
  > as.POSIXct.dates,as.POSIXct.date,as.POSIXct.POSIXlt,as.POSIXct.Date,as.POSIXct,%
  > as.Date.numeric,as.Date.factor,as.Date.default,as.Date.dates,as.Date.date,%
  > as.Date.character,as.Date.POSIXlt,as.Date.POSIXct,as.Date,arrayInd,%
  > aperm.table,aperm.default,anyDuplicated.matrix,anyDuplicated.default,anyDuplicated.data.frame,%
  > anyDuplicated.array,anyDuplicated,all.vars,all.names,all.equal.raw,%
  > all.equal.numeric,all.equal.list,all.equal.language,all.equal.formula,all.equal.factor,%
  > all.equal.default,all.equal.character,all.equal.POSIXct,all.equal,agrep,%
  > addTaskCallback,addNA,Vectorize,T,Sys.which,%
  > Sys.unsetenv,Sys.umask,Sys.timezone,Sys.time,Sys.sleep,%
  > Sys.setlocale,Sys.setenv,Sys.setFileTime,Sys.readlink,Sys.putenv,%
  819,821c819,822
  < Math.POSIXt,Math.Date,Map,La.svd,LETTERS,%
  < ISOdatetime,ISOdate,Find,Filter,F,%
  < Encoding<-,Encoding,Cstack_info%
  ---
  > Math.POSIXt,Math.Date,Map,La.svd,La.eigen,%
  > La.chol2inv,La.chol,LETTERS,ISOdatetime,ISOdate,%
  > Find,Filter,F,Encoding<-,Encoding,%
  > Cstack_info%
  1390,1398c1391,1398
  < mgus1,mgus,match.ratetable,lung,logan,%
  < leukemia,labels.survreg,kidney,jasa1,jasa,%
  < is.ratetable,is.na.ratetable,is.na.coxph.penalty,is.na.Surv,is.Surv,%
  < heart,frailty.t,frailty.gaussian,frailty.gamma,frailty,%
  < format.Surv,dsurvreg,coxph.fit,coxph.detail,coxph.control,%
  < coxph,cox.zph,colon,cluster,clogit,%
  < cgd,cch,cancer,bladder2,bladder1,%
  < bladder,basehaz,attrassign,aml,aareg,%
  < Surv%
  ---
  > mgus1,mgus,match.ratetable,lung,leukemia,%
  > labels.survreg,kidney,jasa1,jasa,is.ratetable,%
  > is.na.ratetable,is.na.coxph.penalty,is.na.Surv,is.Surv,heart,%
  > frailty.t,frailty.gaussian,frailty.gamma,frailty,format.Surv,%
  > dsurvreg,coxph.fit,coxph.detail,coxph.control,coxph,%
  > cox.zph,colon,cluster,clogit,cgd,%
  > cch,cancer,bladder2,bladder1,bladder,%
  > basehaz,attrassign,aml,aareg,Surv%
  2057c2057
  < [1,] "2.3.3"
  ---
  > [1,] "2.3.4"
  OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [2s/3s] OK
• checking re-building of vignette PDFs ... [7s/8s] OK
• checking PDF version of manual ... OK