• using R Under development (unstable) (2012-08-11 r60235)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘SamplerCompare/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘SamplerCompare’ version ‘1.2.2’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking whether package ‘SamplerCompare’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... NOTE
  Foreign function call(s) with ‘PACKAGE’ argument in different package:
  .Call("initseq", ..., PACKAGE = "mcmc")
  See the chapter ‘System and foreign language interfaces’ of the
  ‘Writing R Extensions’ manual.
• checking R code for possible problems ... NOTE
  comparison.plot: no visible binding for global variable ‘tuning’
  comparison.plot: no visible binding for global variable ‘evals’
  comparison.plot: no visible binding for global variable ‘act’
  comparison.plot: no visible binding for global variable ‘act.025’
  comparison.plot: no visible binding for global variable ‘act.975’
  comparison.plot: no visible binding for global variable ‘lim’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [27s/15s] OK
  Running ‘test-chud.R’ [0s/0s]
  Running ‘test-gradients.R’ [0s/0s]
  Running ‘test-indep-mh.R’ [1s/1s]
  Running ‘test-misc.R’ [0s/0s]
  Running ‘test-samplers.R’ [24s/13s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [8s/8s] OK
• checking re-building of vignette PDFs ... [10s/11s] OK
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/SamplerCompare.Rcheck/00check.log’
  for details.