- using R Under development (unstable) (2012-08-11 r60235)
- using platform: x86_64-unknown-linux-gnu (64-bit)
- using session charset: UTF-8
- checking for file ‘ISwR/DESCRIPTION’ ... OK
- this is package ‘ISwR’ version ‘2.0-6’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking whether package ‘ISwR’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [1s/1s] OK
- checking for unstated dependencies in tests ... OK
- checking tests ... [10s/11s] OK
Running ‘allexercises.R’ [4s/4s]
Comparing ‘allexercises.Rout’ to ‘allexercises.Rout.save’ ...26c26
< NA's :5 NA's :11 NA's :5 NA's :119 NA's :66
---
> NA's : 5.000 NA's :11.000 NA's :5 NA's :119.0 NA's :66.000
2176c2176
< Achieved convergence tolerance: 1.65e-06
---
> Achieved convergence tolerance: 2.166e-06
2213c2213
< ec50 0.03655499 1.3770101
---
> ec50 0.03655498 1.3770101
2223c2223
< ec50 0.05332677 1.377884
---
> ec50 0.05332676 1.377884
Running ‘allscripts.R’ [6s/6s]
Comparing ‘allscripts.Rout’ to ‘allscripts.Rout.save’ ...486c486
< [1] 171
---
> [1] 170
518c518
< [1] "/home/hornik/tmp/R.check/r-devel/Work/build/Packages/ISwR/rawdata/thuesen.txt"
---
> [1] "/Users/pd/BIOSTAT/books/ISWR-2nd-ed/ISwR.Rcheck/ISwR/rawdata/thuesen.txt"
604c604
< 25.0 202.2 313.5 340.2 462.8 915.0 321
---
> 25.0 202.2 313.5 340.2 462.8 915.0 321.0
606,621c606,621
< age menarche sex igf1
< Min. : 0.170 Min. :1.000 Min. :1.000 Min. : 25.0
< 1st Qu.: 9.053 1st Qu.:1.000 1st Qu.:1.000 1st Qu.:202.2
< Median :12.560 Median :1.000 Median :2.000 Median :313.5
< Mean :15.095 Mean :1.476 Mean :1.534 Mean :340.2
< 3rd Qu.:16.855 3rd Qu.:2.000 3rd Qu.:2.000 3rd Qu.:462.8
< Max. :83.000 Max. :2.000 Max. :2.000 Max. :915.0
< NA's :5 NA's :635 NA's :5 NA's :321
< tanner testvol
< Min. :1.00 Min. : 1.000
< 1st Qu.:1.00 1st Qu.: 1.000
< Median :2.00 Median : 3.000
< Mean :2.64 Mean : 7.896
< 3rd Qu.:5.00 3rd Qu.:15.000
< Max. :5.00 Max. :30.000
< NA's :240 NA's :859
---
> age menarche sex
> Min. : 0.170 Min. : 1.000 Min. :1.000
> 1st Qu.: 9.053 1st Qu.: 1.000 1st Qu.:1.000
> Median :12.560 Median : 1.000 Median :2.000
> Mean :15.095 Mean : 1.476 Mean :1.534
> 3rd Qu.:16.855 3rd Qu.: 2.000 3rd Qu.:2.000
> Max. :83.000 Max. : 2.000 Max. :2.000
> NA's : 5.000 NA's :635.000 NA's :5.000
> igf1 tanner testvol
> Min. : 25.0 Min. : 1.00 Min. : 1.000
> 1st Qu.:202.2 1st Qu.: 1.00 1st Qu.: 1.000
> Median :313.5 Median : 2.00 Median : 3.000
> Mean :340.2 Mean : 2.64 Mean : 7.896
> 3rd Qu.:462.8 3rd Qu.: 5.00 3rd Qu.: 15.000
> Max. :915.0 Max. : 5.00 Max. : 30.000
> NA's :321.0 NA's :240.00 NA's :859.000
636c636
< NA's :5 NA's :321
---
> NA's : 5.000 NA's :321.0
644c644
< NA's :859
---
> NA's :859.000
705c705
< NA's :145
---
> NA's :145.0
713c713
< NA's :141
---
> NA's :141.000
723c723
< NA's :176
---
> NA's :176.0
1813,1814c1813,1814
< Max. NA's
< "1996-02-22" "338"
---
> Max.
> "1996-02-22"
2842c2842
< Mean :1.373 Mean :164326 Mean :23.00
---
> Mean :1.373 Mean :164325 Mean :23.00
2851c2851
< Mean :164326 Mean :23.00
---
> Mean :164325 Mean :23.00
4171c4171
< Achieved convergence tolerance: 7.238e-09
---
> Achieved convergence tolerance: 1.199e-08
4208c4208
< Achieved convergence tolerance: 5.297e-06
---
> Achieved convergence tolerance: 5.27e-06
4224c4224
< alpha 255.97695 15.03921 17.021 <2e-16 ***
---
> alpha 255.97694 15.03920 17.021 <2e-16 ***
4233c4233
< Achieved convergence tolerance: 2.73e-06
---
> Achieved convergence tolerance: 2.948e-06
4278c4278
< Achieved convergence tolerance: 5.485e-06
---
> Achieved convergence tolerance: 5.472e-06
4287c4287
< alpha 233.5007561 294.76267643
---
> alpha 233.5007561 294.76267631
4292,4294c4292,4294
< alpha 226.50065212 285.4532555
< beta 1.13125578 1.2477285
< gamma 0.05443818 0.0862269
---
> alpha 226.50064553 285.45324094
> beta 1.13125578 1.24772849
> gamma 0.05443818 0.08622691
- checking PDF version of manual ... OK