• using R Under development (unstable) (2013-04-22 r62639)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘xpose4specific/DESCRIPTION’ ... OK
• this is package ‘xpose4specific’ version ‘4.4.0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘xpose4specific’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  Found the following assignments to the global environment:
  File ‘xpose4specific/R/bootgam.R’:
  assign(pos = 1, paste("bootgam.xpose.", pars, ".", object@Runno,
  sep = ""), bootgam.obj, immediate = T)
  assign(pos = 1, "current.bootgam", bootgam.obj, immediate = T)
  File ‘xpose4specific/R/bootgam.plots.R’:
  assign(pos = 1, "current.bootgam", eval(as.name(gobjname)), immediate = T)
  assign(pos = 1, "current.bootgam", eval(as.name(gobjname)), immediate = T)
  assign(pos = 1, "current.bootscm", bootgam.obj, immediate = T)
  assign(pos = 1, "current.bootgam", bootgam.obj, immediate = T)
  File ‘xpose4specific/R/check.gamobj.R’:
  assign(pos = 1, "current.gam", eval(as.name(gobjname)), immediate = T)
  assign(pos = 1, "current.gam", eval(as.name(gobjname)), immediate = T)
  File ‘xpose4specific/R/xp.akaike.plot.R’:
  assign(pos = 1, "current.gam", gamobj, immediate = T)
  File ‘xpose4specific/R/xp.gam.R’:
  assign(pos = 1, paste("gam.xpose.", pars, ".", object@Runno,
  sep = ""), gamobj1, immediate = T)
  assign(pos = 1, "current.gam", gamobj1, immediate = T)
  File ‘xpose4specific/R/xp.ind.inf.fit.R’:
  assign(pos = 1, "current.gam", gamobj, immediate = T)
  File ‘xpose4specific/R/xp.ind.inf.terms.R’:
  assign(pos = 1, "current.gam", gamobj, immediate = T)
  File ‘xpose4specific/R/xp.ind.stud.res.R’:
  assign(pos = 1, "current.gam", gamobj, immediate = T)
  File ‘xpose4specific/R/xp.plot.R’:
  assign(pos = 1, "current.gam", gamobj, immediate = T)
  File ‘xpose4specific/R/xp.summary.R’:
  assign(pos = 1, "current.gam", gamobj, immediate = T)
  File ‘xpose4specific/R/xpose.gam.R’:
  assign("wts", wts, pos = 1)
  assign("gamdata", gamdata, pos = 1)
  assign("covnams", covnams, pos = 1)
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [35s/35s] OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/data/blackswan/ripley/R/packages/tests-devel/xpose4specific.Rcheck/00check.log’
  for details.