• using R Under development (unstable) (2013-04-22 r62639)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘rgenoud/DESCRIPTION’ ... OK
• this is package ‘rgenoud’ version ‘5.7-8.1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘rgenoud’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  genoud : fnLexicalSort: no visible binding for global variable ‘indx’
  genoud: multiple local function definitions for ‘fn1.bfgs’ with
  different formal arguments
  genoud: multiple local function definitions for ‘gr1’ with different
  formal arguments
  genoud: multiple local function definitions for ‘hess.fn’ with
  different formal arguments
  genoud_transform : fnLexicalSort: no visible binding for global
  variable ‘indx’
  genoud_transform: multiple local function definitions for ‘fn1.bfgs’
  with different formal arguments
  genoud_transform: multiple local function definitions for ‘gr1’ with
  different formal arguments
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [16s/16s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [15s/15s] OK
  Running ‘tests.R’ [15s/15s]
  Comparing ‘tests.Rout’ to ‘tests.Rout.save’ ...4c4
  < ## rgenoud (Version 5.7-8.1, Build Date: 2012-06-03)
  ---
  > ## rgenoud (Version 5.7-8, Build Date: 2012-06-03)
  17c17
  < Mon Apr 22 22:30:29 2013
  ---
  > Sun Jun 3 12:21:44 2012
  175,176c175,176
  < Mon Apr 22 22:30:30 2013
  < Total run time : 0 hours 0 minutes and 1 seconds
  ---
  > Sun Jun 3 12:21:46 2012
  > Total run time : 0 hours 0 minutes and 2 seconds
  204c204
  < Mon Apr 22 22:30:30 2013
  ---
  > Sun Jun 3 12:21:46 2012
  362c362
  < Mon Apr 22 22:30:32 2013
  ---
  > Sun Jun 3 12:21:48 2012
  398c398
  < Mon Apr 22 22:30:32 2013
  ---
  > Sun Jun 3 12:21:48 2012
  556c556
  < Mon Apr 22 22:30:34 2013
  ---
  > Sun Jun 3 12:21:50 2012
  606c606
  < Mon Apr 22 22:30:34 2013
  ---
  > Sun Jun 3 12:21:50 2012
  828,829c828,829
  < Mon Apr 22 22:30:43 2013
  < Total run time : 0 hours 0 minutes and 9 seconds
  ---
  > Sun Jun 3 12:21:57 2012
  > Total run time : 0 hours 0 minutes and 7 seconds
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/data/blackswan/ripley/R/packages/tests-devel/rgenoud.Rcheck/00check.log’
  for details.