• using R Under development (unstable) (2013-04-22 r62639)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘lfe/DESCRIPTION’ ... OK
• this is package ‘lfe’ version ‘1.4-941’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘lfe’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [29s/23s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [59s/62s] OK
  Running ‘comparelm.R’
  Comparing ‘comparelm.Rout’ to ‘comparelm.Rout.save’ ... OK
  Running ‘degenerate.R’
  Comparing ‘degenerate.Rout’ to ‘degenerate.Rout.save’ ...50,51c50
  < In chol.default(mat, pivot = TRUE) :
  < the matrix is either rank-deficient or indefinite
  ---
  > In chol.default(mat, pivot = TRUE) : matrix not positive definite
  Running ‘efcheck.R’
  Comparing ‘efcheck.Rout’ to ‘efcheck.Rout.save’ ...45,46c45
  < In chol.default(mat, pivot = TRUE) :
  < the matrix is either rank-deficient or indefinite
  ---
  > In chol.default(mat, pivot = TRUE) : matrix not positive definite
  Running ‘fourfac.R’ [19s/21s]
  Comparing ‘fourfac.Rout’ to ‘fourfac.Rout.save’ ...25c25
  < 1.620 0.006 1.633
  ---
  > 2.240 0.012 2.178
  127c127
  < accuracy: 9.36e-10 9.03e-11 1.27e-11 9.28e-12
  ---
  > accuracy: 9.36e-10 9.03e-11 1.27e-11 9.27e-12
  183c183
  < 12.781 0.114 15.030
  ---
  > 14.693 0.060 14.767
  Running ‘ivtest.R’
  Comparing ‘ivtest.Rout’ to ‘ivtest.Rout.save’ ... OK
  Running ‘lfetest.R’
  Comparing ‘lfetest.Rout’ to ‘lfetest.Rout.save’ ...13c13
  < In sample.int(x, size, replace, prob) :
  ---
  > In sample(300, length(x), replace = TRUE, prob = c(2, rep(1, 299))) :
  Running ‘nonest.R’
  Comparing ‘nonest.Rout’ to ‘nonest.Rout.save’ ... OK
  Running ‘onefac.R’
  Comparing ‘onefac.Rout’ to ‘onefac.Rout.save’ ... OK
  Running ‘verify.R’
  Comparing ‘verify.Rout’ to ‘verify.Rout.save’ ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [11s/11s] OK
• checking re-building of vignette PDFs ... [10s/11s] OK
• checking PDF version of manual ... OK