• using R Under development (unstable) (2013-04-22 r62639)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘iSubpathwayMiner/DESCRIPTION’ ... OK
• this is package ‘iSubpathwayMiner’ version ‘3.0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘iSubpathwayMiner’ can be installed ... [14s/15s] OK
• checking installed package size ... NOTE
  installed size is 5.4Mb
  sub-directories of 1Mb or more:
  data 2.3Mb
  localdata 2.1Mb
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [145s/146s] OK
• checking re-building of vignette PDFs ... NOTE
  Error in re-building vignettes:
  ...
  
  Attaching package: ‘XML’
  
  The following object is masked from ‘package:graph’:
  
  addNode
  
  The following object is masked from ‘package:tools’:
  
  toHTML
  
  Warning: replacing previous import ‘degree’ when loading ‘igraph’
  Warning: replacing previous import ‘edges’ when loading ‘igraph’
  Warning: replacing previous import ‘transitivity’ when loading ‘igraph’
  Warning: replacing previous import ‘addNode’ when loading ‘XML’
  Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
  Running 'texi2dvi' on 'iSubpathwayMiner.tex' failed.
  LaTeX errors:
  ! LaTeX Error: File `subpathwayiGCompound' not found.
  
  See the LaTeX manual or LaTeX Companion for explanation.
  Type H <return> for immediate help.
  ...
  Calls: buildVignettes -> texi2pdf -> texi2dvi
  Execution halted
  
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  ‘/data/blackswan/ripley/R/packages/tests-devel/iSubpathwayMiner.Rcheck/00check.log’
  for details.