• using R Under development (unstable) (2013-04-22 r62639)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘gcbd/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘gcbd’ version ‘0.2.4’
• checking package namespace information ... OK
• checking package dependencies ... NOTE
  Package suggested but not available for checking: ‘gputools’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘gcbd’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  matmultBenchmarkgputools: no visible global function definition for
  ‘gpuMatMult’
  qrBenchmarkgputools: no visible global function definition for ‘gpuQr’
  svdBenchmarkgputools: no visible global function definition for
  ‘gpuSvd’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... NOTE
  The following files are already in R: ‘jss.bst’, ‘jss.cls’
  Please remove them from your package.
  The following directories should probably not be installed:
  ‘auto’, ‘figures’
  
  Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
  or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
• checking examples ... NONE
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... NOTE
  Error in re-building vignettes:
  ...
  Loading required package: RSQLite
  Loading required package: DBI
  Loading required package: plyr
  Loading required package: reshape
  
  Attaching package: ‘reshape’
  
  The following object is masked from ‘package:plyr’:
  
  rename, round_any
  
  Loading required package: lattice
  Warning in packageDescription("gputools") :
  no package 'gputools' was found
  Error: processing vignette 'gcbd.Rnw' failed with diagnostics:
  subscript out of bounds
  Execution halted
  
• checking PDF version of manual ... OK
  NOTE: There were 4 notes.
  See
  ‘/data/blackswan/ripley/R/packages/tests-devel/gcbd.Rcheck/00check.log’
  for details.