Check results for 'cobs'

using R Under development (unstable) (2013-04-22 r62639)
using platform: x86_64-unknown-linux-gnu (64-bit)
using session charset: UTF-8
checking for file ‘cobs/DESCRIPTION’ ... OK
this is package ‘cobs’ version ‘1.2-2’
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘cobs’ can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking loading without being on the library search path ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... NOTE
File ‘cobs/R/scobs.R’:
.onLoad calls:
packageStartupMessage(sprintf("Package %s (%s) loaded. To cite, see citation(\"%s\")\n", pkg, utils::packageDescription(pkg)$Version, pkg))

See section ‘Good practice’ in '?.onAttach'.

plot.cobs: warning in deparse(x$call, width.cut = 100): partial
argument match of 'width.cut' to 'width.cutoff'
plot.cobs: warning in formatC(x$lambda, dig = 3): partial argument
match of 'dig' to 'digits'
summary.cobs: warning in .print.part(object$coef, nMin = 7, nam =
"coef", digits = digits): partial argument match of 'nam' to 'namX'
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking for portable compilation flags in Makevars ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking compiled code ... OK
checking examples ... [16s/16s] OK
checking for unstated dependencies in tests ... OK
checking tests ... [51s/52s] OK
Running ‘ex1.R’
Comparing ‘ex1.Rout’ to ‘ex1.Rout.save’ ...409c409,410
< [1,] 2.30776 16 18 250.3 7.5999 11
---
> [1,] 2.30776 16 18 250.300 7.59990 11
> [2,] 4.51708 16 18 258.955 1.78571 6
447,453c448,454
< 1 -18.0106902 -9.829675 6.86289 23.5554 31.7365
< 2 -15.9869427 -8.308682 7.35806 23.0248 30.7031
< 3 -14.7253903 -7.299595 7.85201 23.0036 30.4294
< 4 -14.0304377 -6.671152 8.34475 23.3607 30.7199
< 5 -13.6842238 -6.277147 8.83627 23.9497 31.3568
< 6 -13.4881973 -5.984332 9.32657 24.6375 32.1413
< 7 -13.2846859 -5.686895 9.81565 25.3182 32.9160
---
> 1 -18.0106904 -9.829675 6.86289 23.5554 31.7365
> 2 -15.9869429 -8.308682 7.35806 23.0248 30.7031
> 3 -14.7253905 -7.299596 7.85201 23.0036 30.4294
> 4 -14.0304378 -6.671153 8.34475 23.3607 30.7199
> 5 -13.6842240 -6.277147 8.83627 23.9497 31.3568
> 6 -13.4881974 -5.984332 9.32657 24.6375 32.1413
> 7 -13.2846860 -5.686895 9.81565 25.3182 32.9160
569,572c570,573
< [1,] 0.0107117 16 18 263.500 4.00000 18
< [2,] 0.3077451 12 18 263.500 4.00000 18
< [3,] 1.1790290 15 18 263.944 1.77778 16
< [4,] 2.3077627 16 18 264.750 1.00000 15
---
> [1,] 0.00279592 15 18 263.50 4 18
> [2,] 0.00547257 15 18 263.50 4 18
> [3,] 0.30774511 12 18 263.50 4 18
> [4,] 2.30776272 16 18 264.75 1 15
606c607
< $ ifl : int [1:25] 1 1 18 1 1 1 1 18 1 18 ...
---
> $ ifl : int [1:25] 18 18 1 1 1 1 1 18 1 1 ...
885,886c886,887
< Warning message:
< In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) :
---
> Warning messages:
> 1: In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) :
888a890,891
> 2: In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) :
> Check 'ifl'
892a896,899
>
> **** ERROR in algorithm: ifl = 18
>
>
896c903
< R^2 = 95.93% ; empirical tau (over all): 246/500 = 0.492 (target tau= 0.5)
---
> R^2 = 95.93% ; empirical tau (over all): 247/500 = 0.494 (target tau= 0.5)
912c919
< R^2 = 96.02% ; empirical tau (over all): 249/500 = 0.498 (target tau= 0.5)
---
> R^2 = 96.02% ; empirical tau (over all): 248/500 = 0.496 (target tau= 0.5)
1292c1299
< [21] -1.82479e+00 3.65435e-11
---
> [21] -1.82479e+00 3.65434e-11
Running ‘ex2-long.R’ [10s/10s]
Comparing ‘ex2-long.Rout’ to ‘ex2-long.Rout.save’ ...719c719
< [61] -0.0094285 432.6957894
---
> [61] -0.0094285 432.6957858
1477c1477
< [57] 0.40976 0.40976 0.40976 0.40976 0.38342 386.84256
---
> [57] 0.40976 0.40976 0.40976 0.40976 0.38342 386.84235
1484c1484
< [1] 0.81533
---
> [1] 0.81529
1488c1488
< [1] 0.81897
---
> [1] 0.81881
Running ‘ex3.R’
Comparing ‘ex3.Rout’ to ‘ex3.Rout.save’ ... OK
Running ‘multi-constr.R’
Comparing ‘multi-constr.Rout’ to ‘multi-constr.Rout.save’ ...257,258d256
< Warning message:
< In cobs(x, y, constraint = "increase", pointwise = con) : Check 'ifl'
Running ‘pt-ex.R’
Running ‘roof.R’
Comparing ‘roof.Rout’ to ‘roof.Rout.save’ ... OK
Running ‘small-ex.R’
Comparing ‘small-ex.Rout’ to ‘small-ex.Rout.save’ ... OK
Running ‘spline-ex.R’
Comparing ‘spline-ex.Rout’ to ‘spline-ex.Rout.save’ ... OK
Running ‘temp.R’
Comparing ‘temp.Rout’ to ‘temp.Rout.save’ ... OK
Running ‘wind.R’ [21s/21s]
Comparing ‘wind.Rout’ to ‘wind.Rout.save’ ...99c99
< R^2 = 8.22% ; empirical tau (over all): 3287/6574 = 0.5 (target tau= 0.5)
---
> R^2 = 8.22% ; empirical tau (over all): 3286/6574 = 0.4998479 (target tau= 0.5)
checking PDF version of manual ... OK
NOTE: There was 1 note.
See
‘/data/blackswan/ripley/R/packages/tests-devel/cobs.Rcheck/00check.log’
for details.