• using R Under development (unstable) (2013-04-22 r62639)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘VGAM/DESCRIPTION’ ... OK
• this is package ‘VGAM’ version ‘0.9-0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘VGAM’ can be installed ... [27s/28s] OK
• checking installed package size ... NOTE
  installed size is 5.4Mb
  sub-directories of 1Mb or more:
  R 1.1Mb
  help 2.1Mb
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  NB: .First.lib is obsolete and will not be used in R >= 3.0.0
  
  Coef.qrrvglm: no visible binding for global variable ‘optimum’
  Coef.qrrvglm: no visible binding for global variable ‘Darray’
  Coef.qrrvglm: no visible binding for global variable ‘Tolerance’
  callcqoc: no visible binding for '<<-' assignment to
  ‘.VGAM.CQO.cmatrix’
  callcqoc: no visible binding for '<<-' assignment to
  ‘.VGAM.CQO.ocmatrix’
  calldcaoc: no visible binding for global variable ‘U’
  cao.fit: no visible binding for global variable ‘maxitl’
  cao.fit: no visible binding for global variable ‘fv’
  cqo.fit: no visible binding for global variable ‘modelno’
  cqo.fit: no visible binding for global variable ‘quasi.newton’
  cqo.fit: no visible binding for global variable ‘NOS’
  cqo.fit: no visible binding for global variable ‘z’
  cqo.fit: no visible binding for global variable ‘fv’
  loglinb3 : <anonymous>: no visible binding for global variable ‘u3’
  loglinb3 : <anonymous>: no visible binding for global variable ‘u2’
  loglinb3 : <anonymous>: no visible binding for global variable ‘u23’
  loglinb3 : <anonymous>: no visible binding for global variable ‘u1’
  loglinb3 : <anonymous>: no visible binding for global variable ‘u13’
  loglinb3 : <anonymous>: no visible binding for global variable ‘u12’
  loglinb3 : <anonymous>: no visible binding for global variable ‘denom’
  rrvglm.fit: no visible binding for global variable ‘modelno’
  rrvglm.fit: no visible binding for global variable ‘fv’
  rrvglm.fit: no visible binding for global variable ‘one.more’
  rrvglm.fit: no visible binding for global variable ‘rrr.expression’
  uqo.fit: no visible binding for global variable ‘CQO.FastAlgorithm’
  vgam.fit: no visible binding for global variable ‘fv’
  vglm.fit: no visible binding for global variable ‘fv’
  waldtest_formula: no visible global function definition for
  ‘waldtest_lm’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [77s/78s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [11s/11s] OK
• checking re-building of vignette PDFs ... OK
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  ‘/data/blackswan/ripley/R/packages/tests-devel/VGAM.Rcheck/00check.log’
  for details.