• using R Under development (unstable) (2013-04-22 r62639)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘QT/DESCRIPTION’ ... OK
• this is package ‘QT’ version ‘1.3’
• checking package namespace information ... OK
• checking package dependencies ... NOTE
  Package suggested but not available for checking: ‘R2wd’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘QT’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  NB: .First.lib is obsolete and will not be used in R >= 3.0.0
  File ‘QT/R/zzz.R’:
  .First.lib calls:
  require(SASxport)
  require(Hmisc)
  require(lattice)
  require(grid)
  
  Package startup functions should not change the search path.
  See section ‘Good practice’ in '?.onAttach'.
  
  DataCheck: warning in windows(rec = TRUE): partial argument match of
  'rec' to 'record'
  MeanData: warning in windows(rec = TRUE): partial argument match of
  'rec' to 'record'
  QTconc: warning in windows(rec = TRUE): partial argument match of 'rec'
  to 'record'
  QTconc: warning in read.table("predblup.csv", header = TRUE,
  stringsAsFactor = FALSE, sep = ","): partial argument match of
  'stringsAsFactor' to 'stringsAsFactors'
  QTconc: warning in read.table("qtpred.csv", header = TRUE,
  stringsAsFactor = FALSE, sep = ","): partial argument match of
  'stringsAsFactor' to 'stringsAsFactors'
  QTconc: warning in read.table("paraest.csv", header = TRUE,
  stringsAsFactor = FALSE, sep = ","): partial argument match of
  'stringsAsFactor' to 'stringsAsFactors'
  QTconc: warning in read.table("random.csv", header = TRUE,
  stringsAsFactor = FALSE, sep = ","): partial argument match of
  'stringsAsFactor' to 'stringsAsFactors'
  QTconc: warning in read.table(file = "paraest.csv", header = TRUE,
  stringsAsFactor = FALSE, sep = ","): partial argument match of
  'stringsAsFactor' to 'stringsAsFactors'
  QTconc: warning in read.table(file = "iiv.csv", header = TRUE,
  stringsAsFactor = FALSE, sep = ","): partial argument match of
  'stringsAsFactor' to 'stringsAsFactors'
  QTcorrections: warning in windows(rec = TRUE): partial argument match
  of 'rec' to 'record'
  QTcorrections: warning in read.table("qtcipred.csv", header = TRUE,
  stringsAsFactor = FALSE, sep = ","): partial argument match of
  'stringsAsFactor' to 'stringsAsFactors'
  QTcorrections: warning in read.table("qtcsponsorpred.csv", header =
  TRUE, stringsAsFactor = FALSE, sep = ","): partial argument match of
  'stringsAsFactor' to 'stringsAsFactors'
  QTcorrections: warning in read.table(file = "qtciparaest.csv", header =
  TRUE, stringsAsFactor = FALSE, sep = ","): partial argument match of
  'stringsAsFactor' to 'stringsAsFactors'
  QTcorrections: warning in read.table(file = "qtciiiv.csv", header =
  TRUE, stringsAsFactor = FALSE, sep = ","): partial argument match of
  'stringsAsFactor' to 'stringsAsFactors'
  QTcorrections: warning in read.table(file = "qtcirandom.csv", header =
  TRUE, stringsAsFactor = FALSE, sep = ","): partial argument match of
  'stringsAsFactor' to 'stringsAsFactors'
  QTcorrections: warning in read.table("qtcsponsorparaest.csv", header =
  TRUE, stringsAsFactor = FALSE, sep = ","): partial argument match of
  'stringsAsFactor' to 'stringsAsFactors'
  QTcorrections: warning in read.table("qtcsponsoriiv.csv", header =
  TRUE, stringsAsFactor = FALSE, sep = ","): partial argument match of
  'stringsAsFactor' to 'stringsAsFactors'
  QTcorrections: warning in read.table("qtcsponsorrandom.csv", header =
  TRUE, stringsAsFactor = FALSE, sep = ","): partial argument match of
  'stringsAsFactor' to 'stringsAsFactors'
  QTtime: warning in windows(rec = TRUE): partial argument match of 'rec'
  to 'record'
  outputGraph: warning in win.metafile(file = paste(name, ".wmf", sep =
  ""), height = height, width = width): partial argument match of
  'file' to 'filename'
  DataCheck: no visible global function definition for ‘wdGoToBookmark’
  DataCheck: no visible global function definition for ‘wdNormal’
  DataCheck: no visible global function definition for ‘wdPlot’
  DataCheck: no visible global function definition for ‘wdSave’
  InfoCreate: no visible global function definition for ‘wdGet’
  InfoCreate: no visible global function definition for ‘wdNewDoc’
  InfoCreate: no visible global function definition for ‘wdTitle’
  InfoCreate: no visible global function definition for ‘wdSection’
  InfoCreate: no visible global function definition for ‘wdSave’
  MeanData: no visible binding for global variable ‘type’
  MeanData: no visible binding for global variable ‘plotD’
  MeanData: no visible binding for global variable ‘visit’
  MeanData: no visible binding for global variable ‘plotDD’
  MeanData: no visible binding for global variable ‘trtm’
  MeanData: no visible binding for global variable ‘hr.cfb’
  MeanData: no visible binding for global variable ‘rr’
  MeanData: no visible binding for global variable ‘rr.cfb’
  MeanData: no visible binding for global variable ‘plotDD.se’
  MeanData: no visible binding for global variable ‘day’
  MeanData: no visible binding for global variable ‘ddqtc’
  MeanData: no visible binding for global variable ‘plotHys’
  MeanData: no visible global function definition for ‘wdGoToBookmark’
  MeanData: no visible global function definition for ‘wdNormal’
  MeanData: no visible global function definition for ‘wdBody’
  MeanData: no visible global function definition for ‘wdPlot’
  MeanData: no visible global function definition for ‘wdSave’
  QTconc: no visible binding for global variable ‘ID’
  QTconc: no visible binding for global variable ‘PAT’
  QTconc: no visible binding for global variable ‘number’
  QTconc: no visible binding for global variable ‘TYPE’
  QTconc: no visible binding for global variable ‘TRT’
  QTconc: no visible binding for global variable ‘Response’
  QTconc: no visible binding for global variable ‘type’
  QTconc: no visible global function definition for ‘wdGoToBookmark’
  QTconc: no visible global function definition for ‘wdNormal’
  QTconc: no visible global function definition for ‘wdBody’
  QTconc: no visible global function definition for ‘wdTable’
  QTconc: no visible global function definition for ‘wdPlot’
  QTconc: no visible global function definition for ‘wdSave’
  QTcorrections: no visible binding for global variable ‘Response’
  QTcorrections: no visible binding for global variable ‘type’
  QTcorrections: no visible binding for global variable ‘day’
  QTcorrections: no visible binding for global variable ‘strip’
  QTcorrections: no visible binding for global variable ‘id’
  QTcorrections: no visible global function definition for
  ‘wdGoToBookmark’
  QTcorrections: no visible global function definition for ‘wdNormal’
  QTcorrections: no visible global function definition for ‘wdBody’
  QTcorrections: no visible global function definition for ‘wdPlot’
  QTcorrections: no visible global function definition for ‘wdTable’
  QTcorrections: no visible global function definition for ‘wdSave’
  QTtime: no visible binding for global variable ‘trtm’
  QTtime: no visible binding for global variable ‘repfactor’
  QTtime : <anonymous>: no visible binding for global variable
  ‘repfactor’
  QTtime: no visible binding for global variable ‘DAY’
  QTtime: no visible binding for global variable ‘trtm2’
  QTtime: no visible global function definition for ‘wdGoToBookmark’
  QTtime: no visible global function definition for ‘wdNormal’
  QTtime: no visible global function definition for ‘wdBody’
  QTtime: no visible global function definition for ‘wdPlot’
  QTtime: no visible global function definition for ‘wdSave’
  
  Found the following assignments to the global environment:
  File ‘QT/R/QT.R’:
  assign("info", info, envir = .GlobalEnv)
  assign("ExposureResponse", ExposureResponse, envir = .GlobalEnv)
  assign("ExposureResponseQTc", ExposureResponse, envir = .GlobalEnv)
  assign("probs", probs, envir = .GlobalEnv)
  assign("data", data, envir = .GlobalEnv)
  assign("info", info, envir = .GlobalEnv)
  assign("repfactor", repfactor, envir = .GlobalEnv)
  assign("stripnames", stripnames, envir = .GlobalEnv)
  assign("info", info, envir = .GlobalEnv)
  assign("popSlope", popSlope, envir = .GlobalEnv)
  assign("popInt", popInt, envir = .GlobalEnv)
  assign("number", i, envir = .GlobalEnv)
  assign("dataplot", dataplot, envir = .GlobalEnv)
  assign("keytext", keytext, envir = .GlobalEnv)
  assign("keyline", keyline, envir = .GlobalEnv)
  assign("number", i, envir = .GlobalEnv)
  assign("keytext", keytext, envir = .GlobalEnv)
  assign("keyline", keyline, envir = .GlobalEnv)
  assign("ExposureResponse", ExposureResponse, envir = .GlobalEnv)
  assign("ExposureResponse1", ExposureResponse, envir = .GlobalEnv)
  assign("probs", probs, envir = .GlobalEnv)
  assign("keytext", keytext, envir = .GlobalEnv)
  assign("keyline", keyline, envir = .GlobalEnv)
  assign("keytext", keytext, envir = .GlobalEnv)
  assign("keyline", keyline, envir = .GlobalEnv)
  assign("ExposureResponse", ExposureResponse, envir = .GlobalEnv)
  assign("ExposureResponse2", ExposureResponse, envir = .GlobalEnv)
  assign("probs", probs, envir = .GlobalEnv)
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... OK
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  ‘/data/blackswan/ripley/R/packages/tests-devel/QT.Rcheck/00check.log’
  for details.