• using R Under development (unstable) (2013-04-22 r62639)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘ProjectTemplate/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘ProjectTemplate’ version ‘0.4-2’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... NOTE
  Found the following hidden files and directories:
  .gitignore
  inst/defaults/full/cache/.gitignore
  inst/defaults/full/config/.gitignore
  inst/defaults/full/data/.gitignore
  inst/defaults/full/diagnostics/.gitignore
  inst/defaults/full/doc/.gitignore
  inst/defaults/full/graphs/.gitignore
  inst/defaults/full/logs/.gitignore
  inst/defaults/full/munge/.gitignore
  inst/defaults/full/reports/.gitignore
  inst/defaults/full/src/.gitignore
  inst/defaults/minimal/cache/.gitignore
  inst/defaults/minimal/config/.gitignore
  inst/defaults/minimal/data/.gitignore
  inst/defaults/minimal/munge/.gitignore
  inst/defaults/minimal/src/.gitignore
  These were most likely included in error. See section ‘Package
  structure’ in the ‘Writing R Extensions’ manual.
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘ProjectTemplate’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  cache.project: no visible binding for global variable ‘project.info’
  show.project: no visible binding for global variable ‘project.info’
  xlsx.reader: no visible global function definition for ‘loadWorkbook’
  xlsx.reader: no visible global function definition for ‘getSheets’
  xlsx.reader: no visible global function definition for ‘read.xlsx’
  
  Found the following assignments to the global environment:
  File ‘ProjectTemplate/R/arff.reader.R’:
  assign(variable.name, read.arff(filename), envir = .GlobalEnv)
  File ‘ProjectTemplate/R/csv.reader.R’:
  assign(variable.name, read.csv(filename, header = TRUE, sep = ","),
  envir = .GlobalEnv)
  File ‘ProjectTemplate/R/db.reader.R’:
  assign(ProjectTemplate:::clean.variable.name(table), data.parcel,
  envir = .GlobalEnv)
  File ‘ProjectTemplate/R/dbf.reader.R’:
  assign(variable.name, read.dbf(filename), envir = .GlobalEnv)
  File ‘ProjectTemplate/R/epiinfo.reader.R’:
  assign(variable.name, read.epiinfo(filename), envir = .GlobalEnv)
  File ‘ProjectTemplate/R/load.project.R’:
  assign("config", config, envir = .GlobalEnv)
  assign(data.set, data.table(get(data.set, envir = .GlobalEnv)),
  envir = .GlobalEnv)
  assign("logger", logger, envir = .GlobalEnv)
  assign("project.info", project.info, envir = .GlobalEnv)
  File ‘ProjectTemplate/R/mp3.reader.R’:
  assign(variable.name, readMP3(filename), envir = .GlobalEnv)
  File ‘ProjectTemplate/R/mtp.reader.R’:
  assign(variable.name, read.mtp(filename), envir = .GlobalEnv)
  File ‘ProjectTemplate/R/octave.reader.R’:
  assign(variable.name, read.octave(filename), envir = .GlobalEnv)
  File ‘ProjectTemplate/R/ppm.reader.R’:
  assign(variable.name, read.pnm(filename), envir = .GlobalEnv)
  File ‘ProjectTemplate/R/spss.reader.R’:
  assign(variable.name, read.spss(filename, to.data.frame = TRUE),
  envir = .GlobalEnv)
  File ‘ProjectTemplate/R/sql.reader.R’:
  assign(variable.name, NULL, envir = .GlobalEnv)
  assign(variable.name, results, envir = .GlobalEnv)
  assign(ProjectTemplate:::clean.variable.name(table), data.parcel,
  envir = .GlobalEnv)
  assign(variable.name, data.parcel, envir = .GlobalEnv)
  assign(variable.name, data.parcel, envir = .GlobalEnv)
  assign(variable.name, NULL, envir = .GlobalEnv)
  File ‘ProjectTemplate/R/stata.reader.R’:
  assign(variable.name, read.dta(filename), envir = .GlobalEnv)
  File ‘ProjectTemplate/R/systat.reader.R’:
  assign(variable.name, read.systat(filename), envir = .GlobalEnv)
  File ‘ProjectTemplate/R/tsv.reader.R’:
  assign(variable.name, read.csv(filename, header = TRUE, sep = "\t"),
  envir = .GlobalEnv)
  File ‘ProjectTemplate/R/wsv.reader.R’:
  assign(variable.name, read.csv(filename, header = TRUE, sep = " "),
  envir = .GlobalEnv)
  File ‘ProjectTemplate/R/xls.reader.R’:
  assign(variable.name, read.xls(filename, sheet = sheet.name),
  envir = .GlobalEnv)
  File ‘ProjectTemplate/R/xlsx.reader.R’:
  assign(variable.name, read.xlsx(filename, sheetName = sheet.name,
  header = TRUE), envir = .GlobalEnv)
  File ‘ProjectTemplate/R/xport.reader.R’:
  assign(variable.name, read.xport(filename), envir = .GlobalEnv)
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ... OK
  Running ‘1.R’
  Running ‘2.R’
  Running ‘3.R’
  Running ‘4.R’
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  ‘/data/blackswan/ripley/R/packages/tests-devel/ProjectTemplate.Rcheck/00check.log’
  for details.