Check results for 'PBSmodelling'

using R Under development (unstable) (2013-04-22 r62639)
using platform: x86_64-unknown-linux-gnu (64-bit)
using session charset: UTF-8
checking for file ‘PBSmodelling/DESCRIPTION’ ... OK
this is package ‘PBSmodelling’ version ‘2.64.236’
checking package namespace information ... OK
checking package dependencies ... NOTE
Package suggested but not available for checking: ‘PBSddesolve’
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘PBSmodelling’ can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking loading without being on the library search path ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... NOTE
File ‘PBSmodelling/R/zzz.r’:
.onLoad calls:
packageStartupMessage("\n-----------------------------------------------------------\nPBS Modelling ", pkg_info$Version, " -- Copyright (C) 2005-2012 Fisheries and Oceans Canada\n\nA complete user guide 'PBSmodelling-UG.pdf' is located at \n", userguide_path, "\n\nPackaged on ", pkg_date, "\nPacific Biological Station, Nanaimo\n\nAll available PBS packages can be found at\nhttp://code.google.com/p/pbs-software/\n-----------------------------------------------------------\n\n")
packageStartupMessage("~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n")
packageStartupMessage("ERROR: PBSmodelling requires the tcl package \"BWidget\"\nand cannot proceed until it is installed.\n", "Ubuntu (apt) users can install via the command:\n\tsudo apt-get install bwidget\n", "Bwidget source can be downloaded from\n\thttp://sourceforge.net/projects/tcllib/files/\n")
packageStartupMessage("ERROR: PBSmodelling requires the tcl package \"Tktable\"\nand cannot proceed until it is installed.\n", "Ubuntu (apt) users can install via the command:\n\tsudo apt-get install libtktable2.10\n", "Mac (port) users can install via the command:\n\tsudo port install tktable\n", "assuming Mac Ports is installed (http://www.macports.org/)\n", "tktable can also be donwloaded from \n\thttp://sourceforge.net/projects/tktable/files/\n")
packageStartupMessage("~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n")

See section ‘Good practice’ in '?.onAttach'.

Found the following assignments to the global environment:
File ‘PBSmodelling/R/guiFuns.r’:
assign("minVal", tclvalue(minVar), envir = .GlobalEnv)
assign("curVal", tclvalue(curVar), envir = .GlobalEnv)
assign("maxVal", tclvalue(maxVar), envir = .GlobalEnv)
assign("lastMinVal", minVal, envir = .GlobalEnv)
assign("lastCurVal", curVal, envir = .GlobalEnv)
assign("lastMaxVal", maxVal, envir = .GlobalEnv)
assign("PBS.history", list(), envir = .GlobalEnv)
assign("PBS.history", PBS.history, envir = .GlobalEnv)
assign(key, vars[[key]], envir = .GlobalEnv)
File ‘PBSmodelling/R/listFuns.r’:
assign(namx[i], x[[i]], envir = .GlobalEnv)
File ‘PBSmodelling/R/plotFuns.r’:
assign("colour", tclvalue(.Tcl(paste("tk_chooseColor", .Tcl.args(initialcolor = colour,
title = "Choose a colour")))), envir = .GlobalEnv)
File ‘PBSmodelling/R/supportFuns.r’:
assign(".dwd", getwd(), envir = .GlobalEnv)
assign(".dls", c(".dls", ls(pos = 1, all.names = TRUE)), envir = .GlobalEnv)
assign(".cls", ls(pos = 1, all.names = TRUE), envir = .GlobalEnv)
assign(".cwd", getwd(), envir = .GlobalEnv)
assign(".runExHelperQuit", .runExHelperQuit, envir = .GlobalEnv)
assign(".runExHelper", .runExHelper, envir = .GlobalEnv)
assign(".runExHelperQuit", .runExHelperQuit, envir = .GlobalEnv)
assign(".cls", ls(pos = 1, all.names = TRUE), envir = .GlobalEnv)
assign(".cwd", getwd(), envir = .GlobalEnv)
assign(".dwd", getwd(), envir = .GlobalEnv)
assign(".dls", c(".dls", ls(pos = 1, all.names = TRUE)), envir = .GlobalEnv)
assign("xxy", win, envir = .GlobalEnv)
assign("xx", win, envir = .GlobalEnv)
assign(".testWidHelper", .testWidHelper, envir = .GlobalEnv)
assign(".PBSmod", list(), envir = .GlobalEnv)
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking compiled code ... OK
checking sizes of PDF files under ‘inst/doc’ ... OK
checking installed files from ‘inst/doc’ ... OK
checking examples ... OK
checking for unstated dependencies in vignettes ... OK
checking package vignettes in ‘inst/doc’ ... OK
checking running R code from vignettes ... OK
checking re-building of vignette PDFs ... OK
checking PDF version of manual ... OK
NOTE: There were 2 notes.
See
‘/data/blackswan/ripley/R/packages/tests-devel/PBSmodelling.Rcheck/00check.log’
for details.