• using R Under development (unstable) (2013-04-22 r62639)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘PBSmapping/DESCRIPTION’ ... OK
• this is package ‘PBSmapping’ version ‘2.65.40’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘PBSmapping’ can be installed ... OK
• checking installed package size ... NOTE
  installed size is 5.6Mb
  sub-directories of 1Mb or more:
  data 2.7Mb
  doc 1.4Mb
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File ‘PBSmapping/R/zzz.r’:
  .onLoad calls:
  packageStartupMessage("\n-----------------------------------------------------------\nPBS Mapping ", pkg_info$Version, " -- Copyright (C) 2003-2012 Fisheries and Oceans Canada\n\nPBS Mapping comes with ABSOLUTELY NO WARRANTY;\nfor details see the file COPYING.\nThis is free software, and you are welcome to redistribute\nit under certain conditions, as outlined in the above file.\n\nA complete user guide 'PBSmapping-UG.pdf' is located at \n", userguide_path, "\n\nPackaged on ", pkg_date, "\nPacific Biological Station, Nanaimo\n\nAll available PBS packages can be found at\nhttp://code.google.com/p/pbs-software/\n\nTo see demos, type '.PBSfigs()'.\n-----------------------------------------------------------\n\n")
  
  See section ‘Good practice’ in '?.onAttach'.
  
  Found the following assignments to the global environment:
  File ‘PBSmapping/R/PBSfigs.r’:
  assign("PBSval", PBSval, pos = 1)
  
  Found the following calls to data() loading into the global environment:
  File ‘PBSmapping/R/PBSfigs.r’:
  data(worldLL)
  data(nepacLL)
  data(nepacLL)
  data(nepacLL)
  data(nepacLL)
  data(nepacLL)
  data(bcBathymetry)
  data(nepacLL)
  data(towTracks)
  data(towData)
  data(nepacLLhigh)
  data(nepacLL)
  data(surveyData)
  data(pythagoras)
  See section ‘Good practice’ in ‘?data’.
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [12s/12s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... OK
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  ‘/data/blackswan/ripley/R/packages/tests-devel/PBSmapping.Rcheck/00check.log’
  for details.