* installing *source* package ‘stpphawkes’ ...
** package ‘stpphawkes’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/stpphawkes/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c areapl.cpp -o areapl.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c condInt_mcmc_stpp.cpp -o condInt_mcmc_stpp.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c condInt_mcmc_stpp_branching.cpp -o condInt_mcmc_stpp_branching.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c condInt_mcmc_stpp_branching_md.cpp -o condInt_mcmc_stpp_branching_md.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c condInt_mcmc_stpp_branching_nonunif.cpp -o condInt_mcmc_stpp_branching_nonunif.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c condInt_mcmc_stpp_branching_nonunif_md.cpp -o condInt_mcmc_stpp_branching_nonunif_md.o
condInt_mcmc_stpp_branching_nonunif_md.cpp: In function 'Rcpp::List condInt_mcmc_stpp_branching_nonunif_md(Rcpp::DataFrame, arma::mat, double, std::vector<int, std::allocator<int> >, double, double, double, double, double, double, double, double, arma::mat, std::vector<double>, std::vector<double>, std::vector<double>, std::vector<double>, double, double, std::vector<double>, std::vector<double>, std::vector<double>, std::vector<double>, int, int, bool, bool)':
condInt_mcmc_stpp_branching_nonunif_md.cpp:349:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
349 | for (int i = 0; i < z_curr_t_all.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c condInt_mcmc_temporal.cpp -o condInt_mcmc_temporal.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c condInt_mcmc_temporal_branching.cpp -o condInt_mcmc_temporal_branching.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c condInt_mcmc_temporal_branching_md.cpp -o condInt_mcmc_temporal_branching_md.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c condInt_mcmc_temporal_md.cpp -o condInt_mcmc_temporal_md.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c helper_functions.cpp -o helper_functions.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c homo_ppp.cpp -o homo_ppp.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c model_likelihood.cpp -o model_likelihood.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c nonunif_ppp.cpp -o nonunif_ppp.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c polygon.cpp -o polygon.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c ptinpoly.cpp -o ptinpoly.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c simulate_stpp_hawkes.cpp -o simulate_stpp_hawkes.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c simulate_stpp_hawkes_nonunif.cpp -o simulate_stpp_hawkes_nonunif.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c simulate_temporal_hawkes.cpp -o simulate_temporal_hawkes.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c spatio_temporal_common.cpp -o spatio_temporal_common.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c spatio_temporal_common_nonunif.cpp -o spatio_temporal_common_nonunif.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c temporal_catmark.cpp -o temporal_catmark.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c temporal_catmark_common.cpp -o temporal_catmark_common.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c temporal_catmark_md.cpp -o temporal_catmark_md.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c temporal_common.cpp -o temporal_common.o
spatio_temporal_common.cpp: In function 'double stpp::sample_a_accumulate(const std::vector<double>&, double, double)':
spatio_temporal_common.cpp:16:12: warning: unused variable 'epsilon' [-Wunused-variable]
16 | double epsilon = t_max - 36.0 / b_curr;
| ^~~~~~~
spatio_temporal_common.cpp: In function 'std::vector<int, std::allocator<int> > stpp::sample_y(const std::vector<double>&, const std::vector<double>&, const std::vector<double>&, double, double, double, double, arma::mat)':
spatio_temporal_common.cpp:67:12: warning: unused variable 'epsilon' [-Wunused-variable]
67 | double epsilon = 36.0 / b_curr;
| ^~~~~~~
spatio_temporal_common.cpp: In function 'double stpp::b_posterior(const std::vector<double>&, double, double, double, const std::vector<double>&, const std::vector<double>&)':
spatio_temporal_common.cpp:112:12: warning: unused variable 'epsilon' [-Wunused-variable]
112 | double epsilon = t_max - 38 / b;
| ^~~~~~~
spatio_temporal_common.cpp: In function 'double stpp::missing_data::log_lik(std::vector<double>&, std::vector<double>&, std::vector<double>&, double, double, double, double, double, arma::mat)':
spatio_temporal_common.cpp:205:12: warning: unused variable 'epsilon' [-Wunused-variable]
205 | double epsilon = 36.0 / b;
| ^~~~~~~
spatio_temporal_common_nonunif.cpp: In function 'double stpp_nonunif::sample_a_accumulate(const std::vector<double>&, double, double)':
spatio_temporal_common_nonunif.cpp:16:10: warning: unused variable 'epsilon' [-Wunused-variable]
16 | double epsilon = t_max - 36.0 / b_curr;
| ^~~~~~~
spatio_temporal_common_nonunif.cpp: In function 'std::vector<int, std::allocator<int> > stpp_nonunif::sample_y(const std::vector<double>&, const std::vector<double>&, const std::vector<double>&, double, double, double, double, double, double, double, double)':
spatio_temporal_common_nonunif.cpp:100:10: warning: unused variable 'epsilon' [-Wunused-variable]
100 | double epsilon = 36.0 / b_curr;
| ^~~~~~~
spatio_temporal_common_nonunif.cpp: In function 'double stpp_nonunif::b_posterior(const std::vector<double>&, double, double, double, const std::vector<double>&, const std::vector<double>&)':
spatio_temporal_common_nonunif.cpp:152:10: warning: unused variable 'epsilon' [-Wunused-variable]
152 | double epsilon = t_max - 38 / b;
| ^~~~~~~
spatio_temporal_common_nonunif.cpp: In function 'double stpp_nonunif::missing_data::log_lik(std::vector<double>&, std::vector<double>&, std::vector<double>&, double, double, double, double, double, double, double, double, double)':
spatio_temporal_common_nonunif.cpp:235:11: warning: unused variable 'epsilon' [-Wunused-variable]
235 | double epsilon = 36.0 / b;
| ^~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c temporal_contmark.cpp -o temporal_contmark.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c temporal_contmark_common.cpp -o temporal_contmark_common.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppGSL/include' -I/usr/local/include -fopenmp `/data/gannet/ripley/R/R-devel/bin/Rscript -e "RcppGSL:::CFlags()"` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c utilities.cpp -o utilities.o
temporal_contmark_common.cpp: In function 'double contmark::sample_wscale(const std::vector<double>&, const std::vector<double>&, double)':
temporal_contmark_common.cpp:16:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
16 | for(int i = 0; i < marks.size(); ++i){
| ~~^~~~~~~~~~~~~~
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o stpphawkes.so RcppExports.o areapl.o condInt_mcmc_stpp.o condInt_mcmc_stpp_branching.o condInt_mcmc_stpp_branching_md.o condInt_mcmc_stpp_branching_nonunif.o condInt_mcmc_stpp_branching_nonunif_md.o condInt_mcmc_temporal.o condInt_mcmc_temporal_branching.o condInt_mcmc_temporal_branching_md.o condInt_mcmc_temporal_md.o helper_functions.o homo_ppp.o model_likelihood.o nonunif_ppp.o polygon.o ptinpoly.o simulate_stpp_hawkes.o simulate_stpp_hawkes_nonunif.o simulate_temporal_hawkes.o spatio_temporal_common.o spatio_temporal_common_nonunif.o temporal_catmark.o temporal_catmark_common.o temporal_catmark_md.o temporal_common.o temporal_contmark.o temporal_contmark_common.o utilities.o -lgsl -lgslcblas -lm -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/stpphawkes/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/stpphawkes/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/stpphawkes/src'
installing to /data/gannet/ripley/R/packages/tests-devel/stpphawkes.Rcheck/00LOCK-stpphawkes/00new/stpphawkes/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (stpphawkes)