* installing *source* package ‘sparseSEM’ ...
** package ‘sparseSEM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/sparseSEM/src'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c lassoSEM.c -o lassoSEM.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c lassoSMLv10beta.c -o lassoSMLv10beta.o
lassoSMLv10beta.c: In function 'mainSML_adaENpointLambda':
lassoSMLv10beta.c:3259:16: warning: unused variable 'minEN' [-Wunused-variable]
 3259 |         double minEN                    = ErrorEN[0];
      |                ^~~~~
lassoSMLv10beta.c: In function 'cv_gene_nets_support_Rdg':
lassoSMLv10beta.c:248:23: warning: 'sigma2R' may be used uninitialized [-Wmaybe-uninitialized]
  248 |         if(verbose>4) Rprintf("\t\t\t\t\tExit RidgeCV. sigma2R: %f\t",sigma2R);
      |                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lassoSMLv10beta.c:112:16: note: 'sigma2R' was declared here
  112 |         double sigma2R,i_rho_factor;
      |                ^~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c registerDynamicSymbol.c -o registerDynamicSymbol.o
lassoSMLv10beta.c: In function 'cv_gene_nets_support_adaEN':
lassoSMLv10beta.c:1907:23: warning: 'sigma2R' may be used uninitialized [-Wmaybe-uninitialized]
 1907 |         if(verbose>4) Rprintf("\t\t\t\t\tExit RidgeCV. sigma2R: %f\t",sigma2R);
      |                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lassoSMLv10beta.c:1771:16: note: 'sigma2R' was declared here
 1771 |         double sigma2R,i_rho_factor;
      |                ^~~~~~~
lassoSMLv10beta.c: In function 'mainSML_adaEN':
lassoSMLv10beta.c:2358:23: warning: 'lambda_factor' may be used uninitialized [-Wmaybe-uninitialized]
 2358 |         out_lambda[0] = lambda_factor;
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
lassoSMLv10beta.c:2333:16: note: 'lambda_factor' was declared here
 2333 |         double lambda_factor;
      |                ^~~~~~~~~~~~~
lassoSMLv10beta.c: In function 'cv_gene_nets_support_adaENcv':
lassoSMLv10beta.c:2629:23: warning: 'sigma2R' may be used uninitialized [-Wmaybe-uninitialized]
 2629 |         if(verbose>4) Rprintf("\t\t\t\t\tExit RidgeCV. sigma2R: %f\t",sigma2R);
      |                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lassoSMLv10beta.c:2492:16: note: 'sigma2R' was declared here
 2492 |         double sigma2R,i_rho_factor;
      |                ^~~~~~~
lassoSMLv10beta.c: In function 'mainSML_adaENcv':
lassoSMLv10beta.c:3107:23: warning: 'lambda_factor' may be used uninitialized [-Wmaybe-uninitialized]
 3107 |         out_lambda[0] = lambda_factor;
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
lassoSMLv10beta.c:3085:16: note: 'lambda_factor' was declared here
 3085 |         double lambda_factor;
      |                ^~~~~~~~~~~~~
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o sparseSEM.so lassoSEM.o lassoSMLv10beta.o registerDynamicSymbol.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/sparseSEM/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/sparseSEM/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/sparseSEM/src'
installing to /data/gannet/ripley/R/packages/tests-devel/sparseSEM.Rcheck/00LOCK-sparseSEM/00new/sparseSEM/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sparseSEM)