* installing *source* package ‘spOccupancy’ ... ** package ‘spOccupancy’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (GCC) 14.1.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/spOccupancy/src' g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c PGOcc.cpp -o PGOcc.o PGOcc.cpp: In function 'SEXPREC* PGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': PGOcc.cpp:573:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 573 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ PGOcc.cpp:183:10: note: 'sigmaSqPSamples_r' was declared here 183 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ PGOcc.cpp:575:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 575 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ PGOcc.cpp:184:10: note: 'alphaStarSamples_r' was declared here 184 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ PGOcc.cpp:567:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 567 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ PGOcc.cpp:192:10: note: 'sigmaSqPsiSamples_r' was declared here 192 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ PGOcc.cpp:569:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 569 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ PGOcc.cpp:193:10: note: 'betaStarSamples_r' was declared here 193 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ PGOcc.cpp:650:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 650 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ PGOcc.cpp:212:12: note: 'tmp_0' was declared here 212 | double tmp_0, tmp_02; | ^~~~~ g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c idist.cpp -o idist.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c init.cpp -o init.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c intMsPGOcc.cpp -o intMsPGOcc.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c intPGOcc.cpp -o intPGOcc.o intMsPGOcc.cpp: In function 'SEXPREC* intMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': intMsPGOcc.cpp:697:61: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 697 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ intMsPGOcc.cpp:238:10: note: 'sigmaSqPsiSamples_r' was declared here 238 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ intMsPGOcc.cpp:698:60: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 698 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ intMsPGOcc.cpp:239:10: note: 'betaStarSamples_r' was declared here 239 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ intMsPGOcc.cpp:780:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 780 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ intMsPGOcc.cpp:164:12: note: 'tmp_0' was declared here 164 | double tmp_0, tmp_02; | ^~~~~ g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c lfJSDM.cpp -o lfJSDM.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c lfMsPGOcc.cpp -o lfMsPGOcc.o lfJSDM.cpp: In function 'SEXPREC* lfJSDM(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': lfJSDM.cpp:619:61: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 619 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ lfJSDM.cpp:218:10: note: 'sigmaSqPsiSamples_r' was declared here 218 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ lfJSDM.cpp:620:60: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 620 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfJSDM.cpp:219:10: note: 'betaStarSamples_r' was declared here 219 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp: In function 'SEXPREC* lfMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': lfMsPGOcc.cpp:926:59: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 926 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:280:10: note: 'sigmaSqPSamples_r' was declared here 280 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:927:61: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 927 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:281:10: note: 'alphaStarSamples_r' was declared here 281 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:930:61: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 930 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:289:10: note: 'sigmaSqPsiSamples_r' was declared here 289 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:931:60: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 931 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:290:10: note: 'betaStarSamples_r' was declared here 290 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:1023:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1023 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ lfMsPGOcc.cpp:166:12: note: 'tmp_0' was declared here 166 | double tmp_0, tmp_02; | ^~~~~ g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c mkSpCov.cpp -o mkSpCov.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c msPGOcc.cpp -o msPGOcc.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c nn.cpp -o nn.o msPGOcc.cpp: In function 'SEXPREC* msPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': msPGOcc.cpp:718:59: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 718 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:241:10: note: 'sigmaSqPSamples_r' was declared here 241 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ msPGOcc.cpp:719:61: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 719 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:242:10: note: 'alphaStarSamples_r' was declared here 242 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ msPGOcc.cpp:722:61: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 722 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:250:10: note: 'sigmaSqPsiSamples_r' was declared here 250 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:723:60: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 723 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:251:10: note: 'betaStarSamples_r' was declared here 251 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ msPGOcc.cpp:804:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 804 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ msPGOcc.cpp:156:12: note: 'tmp_0' was declared here 156 | double tmp_0, tmp_02; | ^~~~~ g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c postHocLM.cpp -o postHocLM.o postHocLM.cpp: In function 'SEXPREC* postHocLM(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': postHocLM.cpp:292:26: warning: 'sigmaSqSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 292 | &REAL(sigmaSqSamples_r)[s*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~ postHocLM.cpp:114:10: note: 'sigmaSqSamples_r' was declared here 114 | SEXP sigmaSqSamples_r; | ^~~~~~~~~~~~~~~~ postHocLM.cpp:294:26: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 294 | &REAL(betaStarSamples_r)[s*nRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ postHocLM.cpp:115:10: note: 'betaStarSamples_r' was declared here 115 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rpg.cpp -o rpg.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sfJSDMNNGP.cpp -o sfJSDMNNGP.o sfJSDMNNGP.cpp: In function 'SEXPREC* sfJSDMNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': sfJSDMNNGP.cpp:978:59: warning: 'betaCommSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 978 | F77_NAME(dcopy)(&pOcc, betaComm, &inc, &REAL(betaCommSamples_r)[sPost*pOcc], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:287:10: note: 'betaCommSamples_r' was declared here 287 | SEXP betaCommSamples_r; | ^~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:981:60: warning: 'tauSqBetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 981 | F77_NAME(dcopy)(&pOcc, tauSqBeta, &inc, &REAL(tauSqBetaSamples_r)[sPost*pOcc], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:292:10: note: 'tauSqBetaSamples_r' was declared here 292 | SEXP tauSqBetaSamples_r; | ^~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:984:56: warning: 'betaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 984 | F77_NAME(dcopy)(&pOccN, beta, &inc, &REAL(betaSamples_r)[sPost*pOccN], &inc); | ~~~~^~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:298:10: note: 'betaSamples_r' was declared here 298 | SEXP betaSamples_r; | ^~~~~~~~~~~~~ sfJSDMNNGP.cpp:993:50: warning: 'zSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 993 | F77_NAME(dcopy)(&JN, z, &inc, &REAL(zSamples_r)[sPost*JN], &inc); | ~~~~^~~~~~~~~~~~ sfJSDMNNGP.cpp:305:10: note: 'zSamples_r' was declared here 305 | SEXP zSamples_r; | ^~~~~~~~~~ sfJSDMNNGP.cpp:990:52: warning: 'psiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 990 | F77_NAME(dcopy)(&JN, psi, &inc, &REAL(psiSamples_r)[sPost*JN], &inc); | ~~~~^~~~~~~~~~~~~~ sfJSDMNNGP.cpp:310:10: note: 'psiSamples_r' was declared here 310 | SEXP psiSamples_r; | ^~~~~~~~~~~~ sfJSDMNNGP.cpp:987:55: warning: 'lambdaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 987 | F77_NAME(dcopy)(&Nq, lambda, &inc, &REAL(lambdaSamples_r)[sPost*Nq], &inc); | ~~~~^~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:316:10: note: 'lambdaSamples_r' was declared here 316 | SEXP lambdaSamples_r; | ^~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:996:50: warning: 'wSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 996 | F77_NAME(dcopy)(&Jq, w, &inc, &REAL(wSamples_r)[sPost*Jq], &inc); | ~~~~^~~~~~~~~~~~ sfJSDMNNGP.cpp:321:10: note: 'wSamples_r' was declared here 321 | SEXP wSamples_r; | ^~~~~~~~~~ sfJSDMNNGP.cpp:1007:65: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1007 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:327:10: note: 'sigmaSqPsiSamples_r' was declared here 327 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:1010:64: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1010 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:328:10: note: 'betaStarSamples_r' was declared here 328 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:1014:54: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1014 | F77_NAME(dcopy)(&JN, yWAIC, &inc, &REAL(likeSamples_r)[sPost*JN], &inc); | ~~~~^~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:340:10: note: 'likeSamples_r' was declared here 340 | SEXP likeSamples_r; | ^~~~~~~~~~~~~ sfJSDMNNGP.cpp:1002:79: warning: 'thetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1002 | F77_NAME(dcopy)(&nThetaqSave, &theta[phiIndx * q], &inc, &REAL(thetaSamples_r)[sPost*nThetaqSave], &inc); | ~~~~^~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:429:10: note: 'thetaSamples_r' was declared here 429 | SEXP thetaSamples_r; | ^~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sfMsPGOccNNGP.cpp -o sfMsPGOccNNGP.o sfMsPGOccNNGP.cpp: In function 'SEXPREC* sfMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': sfMsPGOccNNGP.cpp:1251:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1251 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:367:10: note: 'sigmaSqPSamples_r' was declared here 367 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:1252:63: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1252 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:368:10: note: 'alphaStarSamples_r' was declared here 368 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:1255:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1255 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:376:10: note: 'sigmaSqPsiSamples_r' was declared here 376 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:1256:62: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1256 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:377:10: note: 'betaStarSamples_r' was declared here 377 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:1374:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1374 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:242:12: note: 'tmp_0' was declared here 242 | double tmp_0, tmp_02; | ^~~~~ g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sfMsPGOccNNGPPredict.cpp -o sfMsPGOccNNGPPredict.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c spIntPGOcc.cpp -o spIntPGOcc.o sfMsPGOccNNGPPredict.cpp: In function 'SEXPREC* sfMsPGOccNNGPPredict(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': sfMsPGOccNNGPPredict.cpp:144:39: warning: 'nuIndx' may be used uninitialized [-Wmaybe-uninitialized] 144 | if(theta[s*nThetaq + nuIndx * q + ll] > nuMax[ll]){ | ~~~~~~~^~~ sfMsPGOccNNGPPredict.cpp:109:26: note: 'nuIndx' was declared here 109 | int nTheta, phiIndx, nuIndx, sigmaSqIndx; | ^~~~~~ g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c spIntPGOccNNGP.cpp -o spIntPGOccNNGP.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c spMsPGOcc.cpp -o spMsPGOcc.o spIntPGOccNNGP.cpp: In function 'SEXPREC* spIntPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': spIntPGOccNNGP.cpp:322:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 322 | double logDet; | ^~~~~~ spIntPGOccNNGP.cpp:330:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized] 330 | double a, v, b, e, mu, var, aij; | ^ g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c spMsPGOccNNGP.cpp -o spMsPGOccNNGP.o spMsPGOcc.cpp: In function 'SEXPREC* spMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': spMsPGOcc.cpp:1041:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1041 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:291:10: note: 'sigmaSqPSamples_r' was declared here 291 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:1043:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1043 | &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:292:10: note: 'alphaStarSamples_r' was declared here 292 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:1047:36: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1047 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:300:10: note: 'sigmaSqPsiSamples_r' was declared here 300 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:1049:36: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1049 | &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:301:10: note: 'betaStarSamples_r' was declared here 301 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:1168:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1168 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:184:12: note: 'tmp_0' was declared here 184 | double tmp_0, tmp_02; | ^~~~~ spMsPGOccNNGP.cpp: In function 'SEXPREC* spMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': spMsPGOccNNGP.cpp:1079:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1079 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:338:10: note: 'sigmaSqPSamples_r' was declared here 338 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:1081:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1081 | &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:339:10: note: 'alphaStarSamples_r' was declared here 339 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:1085:36: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1085 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:347:10: note: 'sigmaSqPsiSamples_r' was declared here 347 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:1087:36: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1087 | &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:348:10: note: 'betaStarSamples_r' was declared here 348 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:498:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 498 | double logDet; | ^~~~~~ spMsPGOccNNGP.cpp:467:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized] 467 | double a, v, b, e, mu, var, aij; | ^ spMsPGOccNNGP.cpp:1207:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1207 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:233:12: note: 'tmp_0' was declared here 233 | double tmp_0, tmp_02; | ^~~~~ g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c spMsPGOccNNGPPredict.cpp -o spMsPGOccNNGPPredict.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c spMsPGOccPredict.cpp -o spMsPGOccPredict.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c spPGOcc.cpp -o spPGOcc.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c spPGOccNNGP.cpp -o spPGOccNNGP.o spPGOcc.cpp: In function 'SEXPREC* spPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': spPGOcc.cpp:807:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 807 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:208:10: note: 'sigmaSqPSamples_r' was declared here 208 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ spPGOcc.cpp:809:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 809 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:209:10: note: 'alphaStarSamples_r' was declared here 209 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spPGOcc.cpp:801:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 801 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:217:10: note: 'sigmaSqPsiSamples_r' was declared here 217 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:803:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 803 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:218:10: note: 'betaStarSamples_r' was declared here 218 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spPGOcc.cpp:918:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 918 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:238:12: note: 'tmp_0' was declared here 238 | double tmp_0, tmp_02; | ^~~~~ g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c spPGOccNNGPPredict.cpp -o spPGOccNNGPPredict.o spPGOccNNGP.cpp: In function 'SEXPREC* spPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': spPGOccNNGP.cpp:887:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 887 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:262:10: note: 'sigmaSqPSamples_r' was declared here 262 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:889:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 889 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:263:10: note: 'alphaStarSamples_r' was declared here 263 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:881:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 881 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:271:10: note: 'sigmaSqPsiSamples_r' was declared here 271 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:883:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 883 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:272:10: note: 'betaStarSamples_r' was declared here 272 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:389:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 389 | double logDet; | ^~~~~~ spPGOccNNGP.cpp:400:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized] 400 | double a, v, b, e, mu, var, aij; | ^ spPGOccNNGP.cpp:998:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 998 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:292:12: note: 'tmp_0' was declared here 292 | double tmp_0, tmp_02; | ^~~~~ g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c spPGOccPredict.cpp -o spPGOccPredict.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c stMsPGOccNNGP.cpp -o stMsPGOccNNGP.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c stPGOccNNGP.cpp -o stPGOccNNGP.o stMsPGOccNNGP.cpp: In function 'SEXPREC* stMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': stMsPGOccNNGP.cpp:1510:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1510 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:393:10: note: 'sigmaSqPSamples_r' was declared here 393 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1511:63: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1511 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:394:10: note: 'alphaStarSamples_r' was declared here 394 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1514:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1514 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:402:10: note: 'sigmaSqPsiSamples_r' was declared here 402 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1515:62: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1515 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:403:10: note: 'betaStarSamples_r' was declared here 403 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1640:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1640 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:417:10: note: 'etaSamples_r' was declared here 417 | SEXP etaSamples_r; | ^~~~~~~~~~~~ stMsPGOccNNGP.cpp:1641:21: warning: 'ar1ThetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1641 | SET_VECTOR_ELT(result_r, ar1Ind + 1, ar1ThetaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:418:10: note: 'ar1ThetaSamples_r' was declared here 418 | SEXP ar1ThetaSamples_r; | ^~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1664:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1664 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:257:12: note: 'tmp_0' was declared here 257 | double tmp_0, tmp_02; | ^~~~~ stPGOccNNGP.cpp: In function 'SEXPREC* stPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': stPGOccNNGP.cpp:1224:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1224 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:291:10: note: 'etaSamples_r' was declared here 291 | SEXP etaSamples_r; | ^~~~~~~~~~~~ stPGOccNNGP.cpp:1118:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1118 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:300:10: note: 'sigmaSqPSamples_r' was declared here 300 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:1120:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1120 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:301:10: note: 'alphaStarSamples_r' was declared here 301 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:1112:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1112 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:309:10: note: 'sigmaSqPsiSamples_r' was declared here 309 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:1114:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1114 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:310:10: note: 'betaStarSamples_r' was declared here 310 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:481:13: warning: 'sigmaSqTIndx' may be used uninitialized [-Wmaybe-uninitialized] 481 | theta[sigmaSqTIndx] = REAL(ar1Vals_r)[5]; | ^~~~~~~~~~~~ stPGOccNNGP.cpp:427:47: note: 'sigmaSqTIndx' was declared here 427 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx; | ^~~~~~~~~~~~ stPGOccNNGP.cpp:482:13: warning: 'rhoIndx' may be used uninitialized [-Wmaybe-uninitialized] 482 | theta[rhoIndx] = REAL(ar1Vals_r)[4]; | ^~~~~~~ stPGOccNNGP.cpp:427:61: note: 'rhoIndx' was declared here 427 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx; | ^~~~~~~ stPGOccNNGP.cpp:513:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 513 | double logDet; | ^~~~~~ stPGOccNNGP.cpp:445:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized] 445 | double a, v, b, e, mu, var, aij; | ^ g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c stPGOccNNGPPredict.cpp -o stPGOccNNGPPredict.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c svcMsPGOccNNGP.cpp -o svcMsPGOccNNGP.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c svcMsPGOccNNGPPredict.cpp -o svcMsPGOccNNGPPredict.o svcMsPGOccNNGP.cpp: In function 'SEXPREC* svcMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcMsPGOccNNGP.cpp:1327:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1327 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:373:10: note: 'sigmaSqPSamples_r' was declared here 373 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:1328:63: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1328 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:374:10: note: 'alphaStarSamples_r' was declared here 374 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:1331:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1331 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:382:10: note: 'sigmaSqPsiSamples_r' was declared here 382 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:1332:62: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1332 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:383:10: note: 'betaStarSamples_r' was declared here 383 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:1451:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1451 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:249:12: note: 'tmp_0' was declared here 249 | double tmp_0, tmp_02; | ^~~~~ g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c svcPGBinomNNGP.cpp -o svcPGBinomNNGP.o svcPGBinomNNGP.cpp: In function 'SEXPREC* svcPGBinomNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcPGBinomNNGP.cpp:730:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 730 | &REAL(sigmaSqPsiSamples_r)[sPost*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcPGBinomNNGP.cpp:240:10: note: 'sigmaSqPsiSamples_r' was declared here 240 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcPGBinomNNGP.cpp:732:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 732 | &REAL(betaStarSamples_r)[sPost*nRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcPGBinomNNGP.cpp:241:10: note: 'betaStarSamples_r' was declared here 241 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcPGBinomNNGP.cpp:582:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 582 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet) | ^~~ svcPGBinomNNGP.cpp:324:12: note: 'logDet' was declared here 324 | double logDet; | ^~~~~~ g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c svcPGOccNNGP.cpp -o svcPGOccNNGP.o svcPGOccNNGP.cpp: In function 'SEXPREC* svcPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcPGOccNNGP.cpp:982:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 982 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:278:10: note: 'sigmaSqPSamples_r' was declared here 278 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:984:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 984 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:279:10: note: 'alphaStarSamples_r' was declared here 279 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:976:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 976 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:287:10: note: 'sigmaSqPsiSamples_r' was declared here 287 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:978:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 978 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:288:10: note: 'betaStarSamples_r' was declared here 288 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:794:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 794 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet) | ^~~ svcPGOccNNGP.cpp:408:12: note: 'logDet' was declared here 408 | double logDet; | ^~~~~~ svcPGOccNNGP.cpp:1096:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1096 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:308:12: note: 'tmp_0' was declared here 308 | double tmp_0, tmp_02; | ^~~~~ g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c svcPGOccNNGPPredict.cpp -o svcPGOccNNGPPredict.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c svcTMsPGOccNNGP.cpp -o svcTMsPGOccNNGP.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c svcTMsPGOccNNGPPredict.cpp -o svcTMsPGOccNNGPPredict.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c svcTPGBinomNNGP.cpp -o svcTPGBinomNNGP.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c svcTPGOccNNGP.cpp -o svcTPGOccNNGP.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c svcTPGOccNNGPPredict.cpp -o svcTPGOccNNGPPredict.o svcTMsPGOccNNGP.cpp: In function 'SEXPREC* svcTMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcTMsPGOccNNGP.cpp:1632:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1632 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:411:10: note: 'sigmaSqPSamples_r' was declared here 411 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1633:63: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1633 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:412:10: note: 'alphaStarSamples_r' was declared here 412 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1636:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1636 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:420:10: note: 'sigmaSqPsiSamples_r' was declared here 420 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1637:62: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1637 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:421:10: note: 'betaStarSamples_r' was declared here 421 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1766:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1766 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:435:10: note: 'etaSamples_r' was declared here 435 | SEXP etaSamples_r; | ^~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1767:21: warning: 'ar1ThetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1767 | SET_VECTOR_ELT(result_r, ar1Ind + 1, ar1ThetaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:436:10: note: 'ar1ThetaSamples_r' was declared here 436 | SEXP ar1ThetaSamples_r; | ^~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1790:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1790 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:271:12: note: 'tmp_0' was declared here 271 | double tmp_0, tmp_02; | ^~~~~ svcTPGBinomNNGP.cpp: In function 'SEXPREC* svcTPGBinomNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcTPGBinomNNGP.cpp:952:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 952 | &REAL(sigmaSqPsiSamples_r)[sPost*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:261:10: note: 'sigmaSqPsiSamples_r' was declared here 261 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:954:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 954 | &REAL(betaStarSamples_r)[sPost*nRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:262:10: note: 'betaStarSamples_r' was declared here 262 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:1050:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1050 | SET_VECTOR_ELT(result_r, tmp_0, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:274:10: note: 'etaSamples_r' was declared here 274 | SEXP etaSamples_r; | ^~~~~~~~~~~~ svcTPGBinomNNGP.cpp:681:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 681 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet) | ^~~ svcTPGBinomNNGP.cpp:369:12: note: 'logDet' was declared here 369 | double logDet; | ^~~~~~ svcTPGOccNNGP.cpp: In function 'SEXPREC* svcTPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcTPGOccNNGP.cpp:1330:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1330 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:300:10: note: 'etaSamples_r' was declared here 300 | SEXP etaSamples_r; | ^~~~~~~~~~~~ svcTPGOccNNGP.cpp:1205:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1205 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:309:10: note: 'sigmaSqPSamples_r' was declared here 309 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:1207:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1207 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:310:10: note: 'alphaStarSamples_r' was declared here 310 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:1199:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1199 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:318:10: note: 'sigmaSqPsiSamples_r' was declared here 318 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:1201:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1201 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:319:10: note: 'betaStarSamples_r' was declared here 319 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:518:13: warning: 'sigmaSqTIndx' may be used uninitialized [-Wmaybe-uninitialized] 518 | theta[sigmaSqTIndx] = REAL(ar1Vals_r)[5]; | ^~~~~~~~~~~~ svcTPGOccNNGP.cpp:439:47: note: 'sigmaSqTIndx' was declared here 439 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx; | ^~~~~~~~~~~~ svcTPGOccNNGP.cpp:519:13: warning: 'rhoIndx' may be used uninitialized [-Wmaybe-uninitialized] 519 | theta[rhoIndx] = REAL(ar1Vals_r)[4]; | ^~~~~~~ svcTPGOccNNGP.cpp:439:61: note: 'rhoIndx' was declared here 439 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx; | ^~~~~~~ svcTPGOccNNGP.cpp:894:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 894 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet) | ^~~ svcTPGOccNNGP.cpp:457:12: note: 'logDet' was declared here 457 | double logDet; | ^~~~~~ g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c tMsPGOcc.cpp -o tMsPGOcc.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c tPGOcc.cpp -o tPGOcc.o tMsPGOcc.cpp: In function 'SEXPREC* tMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': tMsPGOcc.cpp:1146:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1146 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:278:10: note: 'etaSamples_r' was declared here 278 | SEXP etaSamples_r; | ^~~~~~~~~~~~ tMsPGOcc.cpp:1147:21: warning: 'thetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1147 | SET_VECTOR_ELT(result_r, ar1Ind + 1, thetaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:279:10: note: 'thetaSamples_r' was declared here 279 | SEXP thetaSamples_r; | ^~~~~~~~~~~~~~ tMsPGOcc.cpp:1033:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1033 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:302:10: note: 'sigmaSqPSamples_r' was declared here 302 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:1034:63: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1034 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:303:10: note: 'alphaStarSamples_r' was declared here 303 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:1037:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1037 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:311:10: note: 'sigmaSqPsiSamples_r' was declared here 311 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:1038:62: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1038 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:312:10: note: 'betaStarSamples_r' was declared here 312 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:1168:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1168 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ tMsPGOcc.cpp:183:12: note: 'tmp_0' was declared here 183 | double tmp_0, tmp_02; | ^~~~~ tPGOcc.cpp: In function 'SEXPREC* tPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': tPGOcc.cpp:912:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 912 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:207:10: note: 'etaSamples_r' was declared here 207 | SEXP etaSamples_r; | ^~~~~~~~~~~~ tPGOcc.cpp:819:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 819 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:216:10: note: 'sigmaSqPSamples_r' was declared here 216 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ tPGOcc.cpp:821:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 821 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:217:10: note: 'alphaStarSamples_r' was declared here 217 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ tPGOcc.cpp:813:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 813 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:225:10: note: 'sigmaSqPsiSamples_r' was declared here 225 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:815:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 815 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:226:10: note: 'betaStarSamples_r' was declared here 226 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ tPGOcc.cpp:913:21: warning: 'thetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 913 | SET_VECTOR_ELT(result_r, ar1Ind + 1, thetaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:350:10: note: 'thetaSamples_r' was declared here 350 | SEXP thetaSamples_r; | ^~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c util.cpp -o util.o g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o spOccupancy.so PGOcc.o idist.o init.o intMsPGOcc.o intPGOcc.o lfJSDM.o lfMsPGOcc.o mkSpCov.o msPGOcc.o nn.o postHocLM.o rpg.o sfJSDMNNGP.o sfMsPGOccNNGP.o sfMsPGOccNNGPPredict.o spIntPGOcc.o spIntPGOccNNGP.o spMsPGOcc.o spMsPGOccNNGP.o spMsPGOccNNGPPredict.o spMsPGOccPredict.o spPGOcc.o spPGOccNNGP.o spPGOccNNGPPredict.o spPGOccPredict.o stMsPGOccNNGP.o stPGOccNNGP.o stPGOccNNGPPredict.o svcMsPGOccNNGP.o svcMsPGOccNNGPPredict.o svcPGBinomNNGP.o svcPGOccNNGP.o svcPGOccNNGPPredict.o svcTMsPGOccNNGP.o svcTMsPGOccNNGPPredict.o svcTPGBinomNNGP.o svcTPGOccNNGP.o svcTPGOccNNGPPredict.o tMsPGOcc.o tPGOcc.o util.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -fopenmp make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/spOccupancy/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/spOccupancy/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/spOccupancy/src' installing to /data/gannet/ripley/R/packages/tests-devel/spOccupancy.Rcheck/00LOCK-spOccupancy/00new/spOccupancy/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spOccupancy)