* installing *source* package ‘spAbundance’ ...
** package ‘spAbundance’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/spAbundance/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c DS.cpp -o DS.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NMix.cpp -o NMix.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c abund.cpp -o abund.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c abundGaussian.cpp -o abundGaussian.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c checkAlphaDS.cpp -o checkAlphaDS.o
abundGaussian.cpp: In function 'SEXPREC* abundGaussian(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
abundGaussian.cpp:370:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
370 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
abundGaussian.cpp:163:10: note: 'sigmaSqMuSamples_r' was declared here
163 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
abundGaussian.cpp:372:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
372 | &REAL(betaStarSamples_r)[sPost*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
abundGaussian.cpp:164:10: note: 'betaStarSamples_r' was declared here
164 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
abund.cpp: In function 'SEXPREC* abund(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
abund.cpp:410:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
410 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
abund.cpp:168:10: note: 'sigmaSqMuSamples_r' was declared here
168 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
abund.cpp:412:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
412 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
abund.cpp:169:10: note: 'betaStarSamples_r' was declared here
169 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c checkMSAlphaDS.cpp -o checkMSAlphaDS.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c idist.cpp -o idist.o
NMix.cpp: In function 'SEXPREC* NMix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
NMix.cpp:615:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
615 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
NMix.cpp:200:10: note: 'sigmaSqPSamples_r' was declared here
200 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
NMix.cpp:617:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
617 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
NMix.cpp:201:10: note: 'alphaStarSamples_r' was declared here
201 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
NMix.cpp:609:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
609 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
NMix.cpp:209:10: note: 'sigmaSqMuSamples_r' was declared here
209 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
NMix.cpp:611:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
611 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
NMix.cpp:210:10: note: 'betaStarSamples_r' was declared here
210 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
NMix.cpp:707:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
707 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
NMix.cpp:221:12: note: 'tmp_0' was declared here
221 | double tmp_0, tmp_02;
| ^~~~~
DS.cpp: In function 'SEXPREC* DS(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
DS.cpp:773:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
773 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
DS.cpp:203:10: note: 'sigmaSqPSamples_r' was declared here
203 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
DS.cpp:775:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
775 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
DS.cpp:204:10: note: 'alphaStarSamples_r' was declared here
204 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
DS.cpp:767:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
767 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
DS.cpp:212:10: note: 'sigmaSqMuSamples_r' was declared here
212 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
DS.cpp:769:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
769 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
DS.cpp:213:10: note: 'betaStarSamples_r' was declared here
213 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
DS.cpp:867:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
867 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
DS.cpp:235:12: note: 'tmp_0' was declared here
235 | double tmp_0, tmp_02;
| ^~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c init.cpp -o init.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c lfMsAbund.cpp -o lfMsAbund.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c lfMsAbundGaussian.cpp -o lfMsAbundGaussian.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c lfMsDS.cpp -o lfMsDS.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c lfMsNMix.cpp -o lfMsNMix.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c mkSpCov.cpp -o mkSpCov.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c msAbund.cpp -o msAbund.o
lfMsAbundGaussian.cpp: In function 'SEXPREC* lfMsAbundGaussian(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
lfMsAbundGaussian.cpp:679:59: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
679 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsAbundGaussian.cpp:243:10: note: 'sigmaSqMuSamples_r' was declared here
243 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsAbundGaussian.cpp:680:59: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
680 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsAbundGaussian.cpp:244:10: note: 'betaStarSamples_r' was declared here
244 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c msAbundGaussian.cpp -o msAbundGaussian.o
lfMsDS.cpp: In function 'SEXPREC* lfMsDS(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
lfMsDS.cpp:1152:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1152 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:277:10: note: 'sigmaSqPSamples_r' was declared here
277 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsDS.cpp:1153:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1153 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:278:10: note: 'alphaStarSamples_r' was declared here
278 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsDS.cpp:1156:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1156 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:286:10: note: 'sigmaSqMuSamples_r' was declared here
286 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsDS.cpp:1157:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1157 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:287:10: note: 'betaStarSamples_r' was declared here
287 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsDS.cpp:1259:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1259 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:294:10: note: 'kappaSamples_r' was declared here
294 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
lfMsDS.cpp:1255:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1255 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
lfMsDS.cpp:185:12: note: 'tmp_0' was declared here
185 | double tmp_0, tmp_02;
| ^~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c msDS.cpp -o msDS.o
lfMsAbund.cpp: In function 'SEXPREC* lfMsAbund(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
lfMsAbund.cpp:720:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
720 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:219:10: note: 'sigmaSqMuSamples_r' was declared here
219 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:721:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
721 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:220:10: note: 'betaStarSamples_r' was declared here
220 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsAbund.cpp:806:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
806 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:228:10: note: 'kappaSamples_r' was declared here
228 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c msNMix.cpp -o msNMix.o
lfMsNMix.cpp: In function 'SEXPREC* lfMsNMix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
lfMsNMix.cpp:1013:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1013 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:270:10: note: 'sigmaSqPSamples_r' was declared here
270 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1014:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1014 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:271:10: note: 'alphaStarSamples_r' was declared here
271 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1017:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1017 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:279:10: note: 'sigmaSqMuSamples_r' was declared here
279 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1018:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1018 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:280:10: note: 'betaStarSamples_r' was declared here
280 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1115:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1115 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:287:10: note: 'kappaSamples_r' was declared here
287 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
lfMsNMix.cpp:1111:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1111 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
lfMsNMix.cpp:178:12: note: 'tmp_0' was declared here
178 | double tmp_0, tmp_02;
| ^~~~~
msAbund.cpp: In function 'SEXPREC* msAbund(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
msAbund.cpp:526:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
526 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msAbund.cpp:199:10: note: 'sigmaSqMuSamples_r' was declared here
199 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msAbund.cpp:527:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
527 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msAbund.cpp:200:10: note: 'betaStarSamples_r' was declared here
200 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
msAbund.cpp:610:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
610 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
msAbund.cpp:208:10: note: 'kappaSamples_r' was declared here
208 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
msNMix.cpp: In function 'SEXPREC* msNMix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
msNMix.cpp:829:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
829 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msNMix.cpp:250:10: note: 'sigmaSqPSamples_r' was declared here
250 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
msNMix.cpp:830:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
830 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msNMix.cpp:251:10: note: 'alphaStarSamples_r' was declared here
251 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
msNMix.cpp:833:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
833 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msNMix.cpp:259:10: note: 'sigmaSqMuSamples_r' was declared here
259 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msNMix.cpp:834:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
834 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msNMix.cpp:260:10: note: 'betaStarSamples_r' was declared here
260 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
msNMix.cpp:929:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
929 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
msNMix.cpp:267:10: note: 'kappaSamples_r' was declared here
267 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
msNMix.cpp:925:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
925 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
msNMix.cpp:171:12: note: 'tmp_0' was declared here
171 | double tmp_0, tmp_02;
| ^~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c nn.cpp -o nn.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rpg.cpp -o rpg.o
msAbundGaussian.cpp: In function 'SEXPREC* msAbundGaussian(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
msAbundGaussian.cpp:499:59: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
499 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msAbundGaussian.cpp:217:10: note: 'sigmaSqMuSamples_r' was declared here
217 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msAbundGaussian.cpp:500:59: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
500 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msAbundGaussian.cpp:218:10: note: 'betaStarSamples_r' was declared here
218 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sfMsAbundGaussianNNGP.cpp -o sfMsAbundGaussianNNGP.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sfMsAbundNNGP.cpp -o sfMsAbundNNGP.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sfMsAbundNNGPPredict.cpp -o sfMsAbundNNGPPredict.o
msDS.cpp: In function 'SEXPREC* msDS(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
msDS.cpp:966:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
966 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msDS.cpp:258:10: note: 'sigmaSqPSamples_r' was declared here
258 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
msDS.cpp:967:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
967 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msDS.cpp:259:10: note: 'alphaStarSamples_r' was declared here
259 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
msDS.cpp:970:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
970 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msDS.cpp:267:10: note: 'sigmaSqMuSamples_r' was declared here
267 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msDS.cpp:971:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
971 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msDS.cpp:268:10: note: 'betaStarSamples_r' was declared here
268 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
msDS.cpp:1071:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1071 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
msDS.cpp:275:10: note: 'kappaSamples_r' was declared here
275 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
msDS.cpp:1067:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1067 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
msDS.cpp:179:12: note: 'tmp_0' was declared here
179 | double tmp_0, tmp_02;
| ^~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sfMsDSNNGP.cpp -o sfMsDSNNGP.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sfMsNMixNNGP.cpp -o sfMsNMixNNGP.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sfMsNMixNNGPPredict.cpp -o sfMsNMixNNGPPredict.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c spAbundGaussianNNGP.cpp -o spAbundGaussianNNGP.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c spAbundNNGP.cpp -o spAbundNNGP.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c spAbundNNGPPredict.cpp -o spAbundNNGPPredict.o
sfMsAbundNNGP.cpp: In function 'SEXPREC* sfMsAbundNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
sfMsAbundNNGP.cpp:995:58: warning: 'yRepSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
995 | F77_NAME(dcopy)(&nObsnSp, yRep, &inc, &REAL(yRepSamples_r)[sPost*nObsnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:268:10: note: 'yRepSamples_r' was declared here
268 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundNNGP.cpp:996:56: warning: 'muSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
996 | F77_NAME(dcopy)(&nObsnSp, mu, &inc, &REAL(muSamples_r)[sPost*nObsnSp], &inc);
| ~~~~^~~~~~~~~~~~~
sfMsAbundNNGP.cpp:269:10: note: 'muSamples_r' was declared here
269 | SEXP muSamples_r;
| ^~~~~~~~~~~
sfMsAbundNNGP.cpp:997:58: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
997 | F77_NAME(dcopy)(&nObsnSp, like, &inc, &REAL(likeSamples_r)[sPost*nObsnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:270:10: note: 'likeSamples_r' was declared here
270 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundNNGP.cpp:1004:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1004 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:287:10: note: 'sigmaSqMuSamples_r' was declared here
287 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:1005:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1005 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:288:10: note: 'betaStarSamples_r' was declared here
288 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:1097:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1097 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:296:10: note: 'kappaSamples_r' was declared here
296 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp: In function 'SEXPREC* sfMsAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
sfMsAbundGaussianNNGP.cpp:942:53: warning: 'yRepSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
942 | F77_NAME(dcopy)(&JN, yRep, &inc, &REAL(yRepSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:300:10: note: 'yRepSamples_r' was declared here
300 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:941:51: warning: 'muSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
941 | F77_NAME(dcopy)(&JN, mu, &inc, &REAL(muSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:301:10: note: 'muSamples_r' was declared here
301 | SEXP muSamples_r;
| ^~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:943:53: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
943 | F77_NAME(dcopy)(&JN, like, &inc, &REAL(likeSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:302:10: note: 'likeSamples_r' was declared here
302 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:948:59: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
948 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:319:10: note: 'sigmaSqMuSamples_r' was declared here
319 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:949:59: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
949 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:320:10: note: 'betaStarSamples_r' was declared here
320 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c spDSNNGP.cpp -o spDSNNGP.o
spAbundGaussianNNGP.cpp: In function 'SEXPREC* spAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spAbundGaussianNNGP.cpp:662:52: warning: 'yRepSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
662 | F77_NAME(dcopy)(&J, yRep, &inc, &REAL(yRepSamples_r)[sPost*J], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:229:10: note: 'yRepSamples_r' was declared here
229 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:663:60: warning: 'yRepZeroSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
663 | F77_NAME(dcopy)(&JZero, yRepZero, &inc, &REAL(yRepZeroSamples_r)[sPost*JZero], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:230:10: note: 'yRepZeroSamples_r' was declared here
230 | SEXP yRepZeroSamples_r;
| ^~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:664:50: warning: 'muSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
664 | F77_NAME(dcopy)(&J, mu, &inc, &REAL(muSamples_r)[sPost*J], &inc);
| ~~~~^~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:231:10: note: 'muSamples_r' was declared here
231 | SEXP muSamples_r;
| ^~~~~~~~~~~
spAbundGaussianNNGP.cpp:666:36: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
666 | &REAL(likeSamples_r)[sPost*J], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:232:10: note: 'likeSamples_r' was declared here
232 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:670:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
670 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:247:10: note: 'sigmaSqMuSamples_r' was declared here
247 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:672:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
672 | &REAL(betaStarSamples_r)[sPost*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:248:10: note: 'betaStarSamples_r' was declared here
248 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c spNMixNNGP.cpp -o spNMixNNGP.o
spAbundNNGP.cpp: In function 'SEXPREC* spAbundNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spAbundNNGP.cpp:759:55: warning: 'yRepSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
759 | F77_NAME(dcopy)(&nObs, yRep, &inc, &REAL(yRepSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundNNGP.cpp:222:10: note: 'yRepSamples_r' was declared here
222 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
spAbundNNGP.cpp:758:53: warning: 'muSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
758 | F77_NAME(dcopy)(&nObs, mu, &inc, &REAL(muSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~
spAbundNNGP.cpp:223:10: note: 'muSamples_r' was declared here
223 | SEXP muSamples_r;
| ^~~~~~~~~~~
spAbundNNGP.cpp:761:36: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
761 | &REAL(likeSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundNNGP.cpp:224:10: note: 'likeSamples_r' was declared here
224 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
spAbundNNGP.cpp:860:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
860 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:236:10: note: 'kappaSamples_r' was declared here
236 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
spAbundNNGP.cpp:770:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
770 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:242:10: note: 'sigmaSqMuSamples_r' was declared here
242 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:772:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
772 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:243:10: note: 'betaStarSamples_r' was declared here
243 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c spNMixNNGPPredict.cpp -o spNMixNNGPPredict.o
spNMixNNGP.cpp: In function 'SEXPREC* spNMixNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spNMixNNGP.cpp:1075:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1075 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:258:10: note: 'kappaSamples_r' was declared here
258 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
spNMixNNGP.cpp:975:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
975 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:270:10: note: 'sigmaSqPSamples_r' was declared here
270 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:977:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
977 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:271:10: note: 'alphaStarSamples_r' was declared here
271 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:969:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
969 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:279:10: note: 'sigmaSqMuSamples_r' was declared here
279 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:971:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
971 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:280:10: note: 'betaStarSamples_r' was declared here
280 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:1071:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1071 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
spNMixNNGP.cpp:291:12: note: 'tmp_0' was declared here
291 | double tmp_0, tmp_02;
| ^~~~~
spNMixNNGP.cpp:1092:21: warning: 'tmp_02' may be used uninitialized [-Wmaybe-uninitialized]
1092 | SET_VECTOR_ELT(resultName_r, tmp_02, mkChar("kappa.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:291:19: note: 'tmp_02' was declared here
291 | double tmp_0, tmp_02;
| ^~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c svcAbundNNGP.cpp -o svcAbundNNGP.o
sfMsNMixNNGP.cpp: In function 'SEXPREC* sfMsNMixNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
sfMsNMixNNGP.cpp:1289:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1289 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:335:10: note: 'sigmaSqPSamples_r' was declared here
335 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1290:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1290 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:336:10: note: 'alphaStarSamples_r' was declared here
336 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1293:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1293 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:344:10: note: 'sigmaSqMuSamples_r' was declared here
344 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1294:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1294 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:345:10: note: 'betaStarSamples_r' was declared here
345 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1398:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1398 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:352:10: note: 'kappaSamples_r' was declared here
352 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1394:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1394 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
sfMsNMixNNGP.cpp:237:12: note: 'tmp_0' was declared here
237 | double tmp_0, tmp_02;
| ^~~~~
sfMsNMixNNGP.cpp:1421:21: warning: 'tmp_02' may be used uninitialized [-Wmaybe-uninitialized]
1421 | SET_VECTOR_ELT(resultName_r, tmp_02, mkChar("kappa.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:237:19: note: 'tmp_02' was declared here
237 | double tmp_0, tmp_02;
| ^~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c svcAbundNNGPPredict.cpp -o svcAbundNNGPPredict.o
sfMsDSNNGP.cpp: In function 'SEXPREC* sfMsDSNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
sfMsDSNNGP.cpp:1428:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1428 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:341:10: note: 'sigmaSqPSamples_r' was declared here
341 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1429:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1429 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:342:10: note: 'alphaStarSamples_r' was declared here
342 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1432:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1432 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:350:10: note: 'sigmaSqMuSamples_r' was declared here
350 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1433:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1433 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:351:10: note: 'betaStarSamples_r' was declared here
351 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1542:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1542 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:358:10: note: 'kappaSamples_r' was declared here
358 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1538:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1538 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
sfMsDSNNGP.cpp:243:12: note: 'tmp_0' was declared here
243 | double tmp_0, tmp_02;
| ^~~~~
sfMsDSNNGP.cpp:1568:21: warning: 'tmp_02' may be used uninitialized [-Wmaybe-uninitialized]
1568 | SET_VECTOR_ELT(resultName_r, tmp_02, mkChar("kappa.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:243:19: note: 'tmp_02' was declared here
243 | double tmp_0, tmp_02;
| ^~~~~~
spDSNNGP.cpp: In function 'SEXPREC* spDSNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spDSNNGP.cpp:1234:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1234 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:260:10: note: 'kappaSamples_r' was declared here
260 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
spDSNNGP.cpp:1127:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1127 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:272:10: note: 'sigmaSqPSamples_r' was declared here
272 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1129:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1129 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:273:10: note: 'alphaStarSamples_r' was declared here
273 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1121:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1121 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:281:10: note: 'sigmaSqMuSamples_r' was declared here
281 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1123:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1123 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:282:10: note: 'betaStarSamples_r' was declared here
282 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1230:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1230 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
spDSNNGP.cpp:304:12: note: 'tmp_0' was declared here
304 | double tmp_0, tmp_02;
| ^~~~~
spDSNNGP.cpp:1255:21: warning: 'tmp_02' may be used uninitialized [-Wmaybe-uninitialized]
1255 | SET_VECTOR_ELT(resultName_r, tmp_02, mkChar("kappa.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:304:19: note: 'tmp_02' was declared here
304 | double tmp_0, tmp_02;
| ^~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c svcMsAbundGaussianNNGP.cpp -o svcMsAbundGaussianNNGP.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c svcMsAbundGaussianNNGPPredict.cpp -o svcMsAbundGaussianNNGPPredict.o
svcAbundNNGP.cpp: In function 'SEXPREC* svcAbundNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcAbundNNGP.cpp:713:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
713 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:243:10: note: 'sigmaSqMuSamples_r' was declared here
243 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:715:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
715 | &REAL(betaStarSamples_r)[sPost*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:244:10: note: 'betaStarSamples_r' was declared here
244 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:582:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized]
582 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet)
| ^~~
svcAbundNNGP.cpp:330:12: note: 'logDet' was declared here
330 | double logDet;
| ^~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c util.cpp -o util.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c waicAbund.cpp -o waicAbund.o
svcMsAbundGaussianNNGP.cpp: In function 'SEXPREC* svcMsAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcMsAbundGaussianNNGP.cpp:1030:59: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1030 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcMsAbundGaussianNNGP.cpp:320:10: note: 'sigmaSqMuSamples_r' was declared here
320 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcMsAbundGaussianNNGP.cpp:1031:59: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1031 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcMsAbundGaussianNNGP.cpp:321:10: note: 'betaStarSamples_r' was declared here
321 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o spAbundance.so DS.o NMix.o abund.o abundGaussian.o checkAlphaDS.o checkMSAlphaDS.o idist.o init.o lfMsAbund.o lfMsAbundGaussian.o lfMsDS.o lfMsNMix.o mkSpCov.o msAbund.o msAbundGaussian.o msDS.o msNMix.o nn.o rpg.o sfMsAbundGaussianNNGP.o sfMsAbundNNGP.o sfMsAbundNNGPPredict.o sfMsDSNNGP.o sfMsNMixNNGP.o sfMsNMixNNGPPredict.o spAbundGaussianNNGP.o spAbundNNGP.o spAbundNNGPPredict.o spDSNNGP.o spNMixNNGP.o spNMixNNGPPredict.o svcAbundNNGP.o svcAbundNNGPPredict.o svcMsAbundGaussianNNGP.o svcMsAbundGaussianNNGPPredict.o util.o waicAbund.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/spAbundance/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/spAbundance/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/spAbundance/src'
installing to /data/gannet/ripley/R/packages/tests-devel/spAbundance.Rcheck/00LOCK-spAbundance/00new/spAbundance/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (spAbundance)