* installing *source* package ‘som’ ...
** package ‘som’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/som/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I.   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c som.cc -o som.o
In file included from tntsupp.h:8,
                 from sub.h:1,
                 from SomParam.h:2,
                 from som.cc:4:
tnt/fmat.h: In member function 'void TNT::Fortran_Matrix<T>::destroy() [with T = double]':
tnt/fmat.h:161:9: warning: 'void operator delete [](void*)' called on pointer '*this.TNT::Fortran_Matrix<double>::col_' with nonzero offset 8 [-Wfree-nonheap-object]
  161 |         delete [] (col_);
      |         ^~~~~~~~~~~~~~~~
In member function 'void TNT::Fortran_Matrix<T>::destroy() [with T = double]',
    inlined from 'TNT::Fortran_Matrix<T>::~Fortran_Matrix() [with T = double]' at tnt/fmat.h:211:16,
    inlined from 'double rect_dist(TNT::Region2D<TNT::Fortran_Matrix<double> >, TNT::Region2D<TNT::Fortran_Matrix<double> >)' at SomParam.h:11:19:
tnt/fmat.h:161:9: warning: 'void operator delete [](void*)' called on pointer '<anonymous>.TNT::Fortran_Matrix<double>::col_' with nonzero offset 8 [-Wfree-nonheap-object]
  161 |         delete [] (col_);
      |         ^~~~~~~~~~~~~~~~
In member function 'void TNT::Fortran_Matrix<T>::destroy() [with T = double]',
    inlined from 'TNT::Fortran_Matrix<T>::~Fortran_Matrix() [with T = double]' at tnt/fmat.h:211:16,
    inlined from 'TNT::Subscript find_winner(TNT::DMatrix&, TNT::Subscript, TNT::DMatrix&)' at som.cc:12:40:
tnt/fmat.h:161:9: warning: 'void operator delete [](void*)' called on pointer '<anonymous>.TNT::Fortran_Matrix<double>::col_' with nonzero offset 8 [-Wfree-nonheap-object]
  161 |         delete [] (col_);
      |         ^~~~~~~~~~~~~~~~
In member function 'void TNT::Fortran_Matrix<T>::destroy() [with T = double]',
    inlined from 'TNT::Fortran_Matrix<T>::~Fortran_Matrix() [with T = double]' at tnt/fmat.h:211:16,
    inlined from 'TNT::Subscript find_winner(TNT::DMatrix&, TNT::Subscript, TNT::DMatrix&)' at som.cc:16:36:
tnt/fmat.h:161:9: warning: 'void operator delete [](void*)' called on pointer '<anonymous>.TNT::Fortran_Matrix<double>::col_' with nonzero offset 8 [-Wfree-nonheap-object]
  161 |         delete [] (col_);
      |         ^~~~~~~~~~~~~~~~
In member function 'void TNT::Fortran_Matrix<T>::destroy() [with T = double]',
    inlined from 'TNT::Fortran_Matrix<T>::~Fortran_Matrix() [with T = double]' at tnt/fmat.h:211:16,
    inlined from 'void visual(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&)' at som.cc:57:36:
tnt/fmat.h:161:9: warning: 'void operator delete [](void*)' called on pointer '<anonymous>.TNT::Fortran_Matrix<double>::col_' with nonzero offset 8 [-Wfree-nonheap-object]
  161 |         delete [] (col_);
      |         ^~~~~~~~~~~~~~~~
In member function 'void TNT::Fortran_Matrix<T>::destroy() [with T = double]',
    inlined from 'TNT::Fortran_Matrix<T>::~Fortran_Matrix() [with T = double]' at tnt/fmat.h:211:16,
    inlined from 'int update(TNT::DMatrix&, TNT::DMatrix&, TNT::Subscript, double, TNT::DVector&)' at som.cc:32:24:
tnt/fmat.h:161:9: warning: 'void operator delete [](void*)' called on pointer '<anonymous>.TNT::Fortran_Matrix<double>::col_' with nonzero offset 8 [-Wfree-nonheap-object]
  161 |         delete [] (col_);
      |         ^~~~~~~~~~~~~~~~
In member function 'void TNT::Fortran_Matrix<T>::destroy() [with T = double]',
    inlined from 'TNT::Fortran_Matrix<T>& TNT::Fortran_Matrix<T>::operator=(const TNT::Fortran_Matrix<T>&) [with T = double]' at tnt/fmat.h:227:20,
    inlined from 'TNT::Fortran_Matrix<T>& TNT::Fortran_Matrix<T>::operator=(const TNT::Fortran_Matrix<T>&) [with T = double]' at tnt/fmat.h:217:24,
    inlined from 'int update(TNT::DMatrix&, TNT::DMatrix&, TNT::Subscript, double, TNT::DVector&)' at som.cc:34:17:
tnt/fmat.h:161:9: warning: 'void operator delete [](void*)' called on pointer '*code.TNT::Fortran_Matrix<double>::col_' with nonzero offset 8 [-Wfree-nonheap-object]
  161 |         delete [] (col_);
      |         ^~~~~~~~~~~~~~~~
In member function 'void TNT::Fortran_Matrix<T>::destroy() [with T = double]',
    inlined from 'TNT::Fortran_Matrix<T>::~Fortran_Matrix() [with T = double]' at tnt/fmat.h:211:16,
    inlined from 'double qerror(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, SomParam&)' at som.cc:76:38:
tnt/fmat.h:161:9: warning: 'void operator delete [](void*)' called on pointer '<anonymous>.TNT::Fortran_Matrix<double>::col_' with nonzero offset 8 [-Wfree-nonheap-object]
  161 |         delete [] (col_);
      |         ^~~~~~~~~~~~~~~~
In member function 'void TNT::Fortran_Matrix<T>::destroy() [with T = double]',
    inlined from 'TNT::Fortran_Matrix<T>::~Fortran_Matrix() [with T = double]' at tnt/fmat.h:211:16,
    inlined from 'void som_top(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, SomParam&, SomParam&, double*)' at som.cc:108:1:
tnt/fmat.h:161:9: warning: 'void operator delete [](void*)' called on pointer 'cord.TNT::Fortran_Matrix<double>::col_' with nonzero offset 8 [-Wfree-nonheap-object]
  161 |         delete [] (col_);
      |         ^~~~~~~~~~~~~~~~
In member function 'void TNT::Fortran_Matrix<T>::destroy() [with T = double]',
    inlined from 'TNT::Fortran_Matrix<T>::~Fortran_Matrix() [with T = double]' at tnt/fmat.h:211:16,
    inlined from 'SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)' at som.cc:225:3:
tnt/fmat.h:161:9: warning: 'void operator delete [](void*)' called on pointer 'Vis.TNT::Fortran_Matrix<double>::col_' with nonzero offset 8 [-Wfree-nonheap-object]
  161 |         delete [] (col_);
      |         ^~~~~~~~~~~~~~~~
In member function 'void TNT::Fortran_Matrix<T>::destroy() [with T = double]',
    inlined from 'TNT::Fortran_Matrix<T>::~Fortran_Matrix() [with T = double]' at tnt/fmat.h:211:16,
    inlined from 'SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)' at som.cc:225:3:
tnt/fmat.h:161:9: warning: 'void operator delete [](void*)' called on pointer 'Code.TNT::Fortran_Matrix<double>::col_' with nonzero offset 8 [-Wfree-nonheap-object]
  161 |         delete [] (col_);
      |         ^~~~~~~~~~~~~~~~
In member function 'void TNT::Fortran_Matrix<T>::destroy() [with T = double]',
    inlined from 'TNT::Fortran_Matrix<T>::~Fortran_Matrix() [with T = double]' at tnt/fmat.h:211:16,
    inlined from 'SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)' at som.cc:225:3:
tnt/fmat.h:161:9: warning: 'void operator delete [](void*)' called on pointer 'Data.TNT::Fortran_Matrix<double>::col_' with nonzero offset 8 [-Wfree-nonheap-object]
  161 |         delete [] (col_);
      |         ^~~~~~~~~~~~~~~~
In member function 'void TNT::Fortran_Matrix<T>::destroy() [with T = double]',
    inlined from 'TNT::Fortran_Matrix<T>::~Fortran_Matrix() [with T = double]' at tnt/fmat.h:211:16,
    inlined from 'SEXPREC* som(SEXP, SEXP, SEXP)' at som.cc:198:3:
tnt/fmat.h:161:9: warning: 'void operator delete [](void*)' called on pointer 'Vis.TNT::Fortran_Matrix<double>::col_' with nonzero offset 8 [-Wfree-nonheap-object]
  161 |         delete [] (col_);
      |         ^~~~~~~~~~~~~~~~
In member function 'void TNT::Fortran_Matrix<T>::destroy() [with T = double]',
    inlined from 'TNT::Fortran_Matrix<T>::~Fortran_Matrix() [with T = double]' at tnt/fmat.h:211:16,
    inlined from 'SEXPREC* som(SEXP, SEXP, SEXP)' at som.cc:198:3:
tnt/fmat.h:161:9: warning: 'void operator delete [](void*)' called on pointer 'Cord.TNT::Fortran_Matrix<double>::col_' with nonzero offset 8 [-Wfree-nonheap-object]
  161 |         delete [] (col_);
      |         ^~~~~~~~~~~~~~~~
In member function 'void TNT::Fortran_Matrix<T>::destroy() [with T = double]',
    inlined from 'TNT::Fortran_Matrix<T>::~Fortran_Matrix() [with T = double]' at tnt/fmat.h:211:16,
    inlined from 'SEXPREC* som(SEXP, SEXP, SEXP)' at som.cc:198:3:
tnt/fmat.h:161:9: warning: 'void operator delete [](void*)' called on pointer 'Code.TNT::Fortran_Matrix<double>::col_' with nonzero offset 8 [-Wfree-nonheap-object]
  161 |         delete [] (col_);
      |         ^~~~~~~~~~~~~~~~
In member function 'void TNT::Fortran_Matrix<T>::destroy() [with T = double]',
    inlined from 'TNT::Fortran_Matrix<T>::~Fortran_Matrix() [with T = double]' at tnt/fmat.h:211:16,
    inlined from 'SEXPREC* som(SEXP, SEXP, SEXP)' at som.cc:198:3:
tnt/fmat.h:161:9: warning: 'void operator delete [](void*)' called on pointer 'Data.TNT::Fortran_Matrix<double>::col_' with nonzero offset 8 [-Wfree-nonheap-object]
  161 |         delete [] (col_);
      |         ^~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o som.so som.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/som/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/som/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/som/src'
installing to /data/gannet/ripley/R/packages/tests-devel/som.Rcheck/00LOCK-som/00new/som/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (som)