* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/smacofx.Rcheck’
* using R Under development (unstable) (2024-04-05 r86344)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘smacofx/DESCRIPTION’ ... OK
* this is package ‘smacofx’ version ‘0.6-6’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘smacofx’ can be installed ... [34s/40s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/smacofx-00install.html' for details.
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [61s/71s] OK
* checking Rd files ... NOTE
checkRd: (-1) bcmds.Rd:111: Lost braces; missing escapes or markup?
   111 | This function minimizes the Box-Cox Stress of Chen & Buja (2013) via gradient descent. This is a ratio metric scaling method. The transformations are not straightforward to interpret but mu is associated with fitted distances in the configuration and lambda with the dissimilarities. Concretely for fitted distances (attraction part) it is BC_{mu+lambda}(d(X)) and for the repulsion part it is delta^lambdaBC_{mu}(d(X)) with BC being the one-parameter Box Cox transformation.
       |                                                                                                                                                                                                                                                                                                                                                        ^
checkRd: (-1) bcmds.Rd:111: Lost braces; missing escapes or markup?
   111 | This function minimizes the Box-Cox Stress of Chen & Buja (2013) via gradient descent. This is a ratio metric scaling method. The transformations are not straightforward to interpret but mu is associated with fitted distances in the configuration and lambda with the dissimilarities. Concretely for fitted distances (attraction part) it is BC_{mu+lambda}(d(X)) and for the repulsion part it is delta^lambdaBC_{mu}(d(X)) with BC being the one-parameter Box Cox transformation.
       |                                                                                                                                                                                                                                                                                                                                                                                                                          ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [39s/47s] OK
* checking PDF version of manual ... [9s/15s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE