* installing *source* package ‘shrinkDSM’ ... ** package ‘shrinkDSM’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (GCC) 13.2.0’ using C++11 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/shrinkDSM/src' g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DSTRICT_R_HEADERS -DARMA_WARN_LEVEL=0 -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/stochvol/include' -I'/data/gannet/ripley/R/test-dev/shrinkTVP/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DSTRICT_R_HEADERS -DARMA_WARN_LEVEL=0 -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/stochvol/include' -I'/data/gannet/ripley/R/test-dev/shrinkTVP/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c do_shrinkDSM.cpp -o do_shrinkDSM.o g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DSTRICT_R_HEADERS -DARMA_WARN_LEVEL=0 -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/stochvol/include' -I'/data/gannet/ripley/R/test-dev/shrinkTVP/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c init.cpp -o init.o g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DSTRICT_R_HEADERS -DARMA_WARN_LEVEL=0 -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/stochvol/include' -I'/data/gannet/ripley/R/test-dev/shrinkTVP/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sample_beta_McCausland.cpp -o sample_beta_McCausland.o g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DSTRICT_R_HEADERS -DARMA_WARN_LEVEL=0 -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/stochvol/include' -I'/data/gannet/ripley/R/test-dev/shrinkTVP/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sample_parameters.cpp -o sample_parameters.o In file included from do_shrinkDSM.cpp:9: In function 'double shrinkTVP::TG_MH_step(double, double, double, const arma::vec&, const arma::vec&, double, double, bool, double, double, bool, bool, arma::vec&, double&, double, double, int&, int, int&)', inlined from 'Rcpp::List do_shrinkDSM(arma::vec, arma::mat, std::string, arma::vec, arma::vec, arma::vec, int, int, int, double, double, double, double, arma::vec, bool, bool, double, double, bool, bool, double, double, bool, bool, double, double, bool, bool, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, bool, arma::vec, arma::vec, arma::vec, arma::ivec, bool, Rcpp::List)' at do_shrinkDSM.cpp:744:45: /data/gannet/ripley/R/test-dev/shrinkTVP/include/shrinkTVP.h:238:16: warning: 'e2_phi_samp' may be used uninitialized [-Wmaybe-uninitialized] 238 | return func(current_val, | ~~~~^~~~~~~~~~~~~ 239 | c_tuning_par, | ~~~~~~~~~~~~~ 240 | scale_par, | ~~~~~~~~~~ 241 | scale_vec, | ~~~~~~~~~~ 242 | param_vec, | ~~~~~~~~~~ 243 | b, | ~~ 244 | nu, | ~~~ 245 | is_c, | ~~~~~ 246 | scale_scale, | ~~~~~~~~~~~~ 247 | other_hyp, | ~~~~~~~~~~ 248 | common_shrink_par, | ~~~~~~~~~~~~~~~~~~ 249 | adaptive, | ~~~~~~~~~ 250 | batch, | ~~~~~~ 251 | curr_sd, | ~~~~~~~~ 252 | target_rate, | ~~~~~~~~~~~~ 253 | max_adapt, | ~~~~~~~~~~ 254 | batch_nr, | ~~~~~~~~~ 255 | batch_size, | ~~~~~~~~~~~ 256 | batch_pos); | ~~~~~~~~~~ do_shrinkDSM.cpp: In function 'Rcpp::List do_shrinkDSM(arma::vec, arma::mat, std::string, arma::vec, arma::vec, arma::vec, int, int, int, double, double, double, double, arma::vec, bool, bool, double, double, bool, bool, double, double, bool, bool, double, double, bool, bool, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, bool, arma::vec, arma::vec, arma::vec, arma::ivec, bool, Rcpp::List)': do_shrinkDSM.cpp:418:10: note: 'e2_phi_samp' was declared here 418 | double e2_phi_samp; | ^~~~~~~~~~~ g++-13 -std=gnu++11 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o shrinkDSM.so RcppExports.o do_shrinkDSM.o init.o sample_beta_McCausland.o sample_parameters.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/shrinkDSM/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/shrinkDSM/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/shrinkDSM/src' installing to /data/gannet/ripley/R/packages/tests-devel/shrinkDSM.Rcheck/00LOCK-shrinkDSM/00new/shrinkDSM/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shrinkDSM)