* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/shinyr.Rcheck’ * using R Under development (unstable) (2024-04-20 r86457) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-13 (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘shinyr/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘shinyr’ version ‘0.3.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘shinyr’ can be installed ... [23s/30s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/shinyr-00install.html' for details. * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘e1071’ ‘knitr’ All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [28s/34s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [8s/11s] OK Running ‘testthat.R’ [8s/10s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [25s/33s] ERROR Error(s) in re-building vignettes: --- re-building ‘how_simple_is_data_analysis_with_shinyr.Rmd’ using knitr Failed to parse YAML: title: "shinyr: Data Insights Through Inbuilt R Shiny App" output: rmarkdown::html_vignette %\VignetteEngine{knitr::knitr} ^~~~~~ %\VignetteIndexEntry{shinyr: Data Insights Through Inbuilt R Shiny App} %\usepackage[utf8]{inputenc} Error: processing vignette 'how_simple_is_data_analysis_with_shinyr.Rmd' failed with diagnostics: Scanner error: while scanning a directive at line 3, column 1 could not find expected directive name at line 3, column 2 --- failed re-building ‘how_simple_is_data_analysis_with_shinyr.Rmd’ --- re-building ‘shiny_app.Rmd’ using knitr Failed to parse YAML: title: "shinyr - Basic Example" runtime: shiny output: rmarkdown::html_vignette %\VignetteEngine{knitr::knitr} ^~~~~~ %\VignetteIndexEntry{shinyr - Basic Example} %\usepackage[utf8]{inputenc} Error: processing vignette 'shiny_app.Rmd' failed with diagnostics: Scanner error: while scanning a directive at line 4, column 1 could not find expected directive name at line 4, column 2 --- failed re-building ‘shiny_app.Rmd’ --- re-building ‘shinyr_function_usage.Rmd’ using knitr ** Processing: figure/unnamed-chunk-8-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49861 bytes Input file size = 50011 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35023 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35023 Output IDAT size = 35023 bytes (14838 bytes decrease) Output file size = 35101 bytes (14910 bytes = 29.81% decrease) ** Processing: figure/unnamed-chunk-11-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 79024 bytes Input file size = 79210 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 67536 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 67536 Output IDAT size = 67536 bytes (11488 bytes decrease) Output file size = 67614 bytes (11596 bytes = 14.64% decrease) Failed to parse YAML: title: shinyr - an R package to build analytics dashboard automatically output: rmarkdown::html_vignette %\VignetteEngine{knitr::knitr} ^~~~~~ %\VignetteIndexEntry{shinyr - an R package to build analytics dashboard automatically} %\usepackage[utf8]{inputenc} Error: processing vignette 'shinyr_function_usage.Rmd' failed with diagnostics: Scanner error: while scanning a directive at line 3, column 1 could not find expected directive name at line 3, column 2 --- failed re-building ‘shinyr_function_usage.Rmd’ SUMMARY: processing the following files failed: ‘how_simple_is_data_analysis_with_shinyr.Rmd’ ‘shiny_app.Rmd’ ‘shinyr_function_usage.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [7s/11s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE