* installing *source* package ‘sequoia’ ...
** package ‘sequoia’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
using Fortran compiler: ‘GNU Fortran (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/sequoia/src'
gfortran-13 -fpic -g -O2 -mtune=native -Wall -pedantic -c MkRelA.f90 -o MkRelA.o
gfortran-13 -fpic -g -O2 -mtune=native -Wall -pedantic -c Sequoia.f90 -o Sequoia.o
Sequoia.f90:6291:45:
6291 | Bj, w, l, x, g, y, z, i, r,u,j,e,Ei,m, catX, PAx, DoQuickB
| 1
Warning: Unused variable 'catx' declared at (1) [-Wunused-variable]
Sequoia.f90:9214:87:
9214 | integer :: x, j, fsx(maxSibSize), k,m,r, nCG(2,2), candGP(mxCP,2,2), SAB(2), ix, xx(10)
| 1
Warning: Unused variable 'xx' declared at (1) [-Wunused-variable]
Sequoia.f90:1179:42:
1179 | double precision :: IndBYtmp(1:nYears,2,5)
| 1
Warning: Unused variable 'indbytmp' declared at (1) [-Wunused-variable]
gfortran-13 -fpic -g -O2 -mtune=native -Wall -pedantic -c SimGenoErrors.f90 -o SimGenoErrors.o
gfortran-13 -fpic -g -O2 -mtune=native -Wall -pedantic -c ester.f90 -o ester.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o sequoia.so MkRelA.o Sequoia.o SimGenoErrors.o ester.o init.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/sequoia/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/sequoia/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/sequoia/src'
installing to /data/gannet/ripley/R/packages/tests-devel/sequoia.Rcheck/00LOCK-sequoia/00new/sequoia/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sequoia)