* installing *source* package ‘scs’ ... ** package ‘scs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (GCC) 13.2.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/scs/src' gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o (cp -f scs_mods/rw.c scs_mods/scs.c scs/src && \ cp -f scs_mods/private.c scs/linsys/cpu/direct && \ cp -f scs_mods/scs.mk scs && \ (cd scs && \ (make purge && \ make out/libscsdir.a CC="gcc-13" CFLAGS="-g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic " AR="gcc-ar" RANLIB="gcc-ranlib")) && \ touch scs.ts) make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/scs/src/scs' make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/scs/src/scs' make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/scs/src/scs' gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c src/scs.c -o src/scs.o gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o src/util.o src/util.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o src/cones.o src/cones.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o src/exp_cone.o src/exp_cone.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o src/aa.o src/aa.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o src/rw.o src/rw.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o src/linalg.o src/linalg.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o src/ctrlc.o src/ctrlc.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o src/scs_version.o src/scs_version.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o src/normalize.o src/normalize.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o linsys/cpu/direct/private.o linsys/cpu/direct/private.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o linsys/external/amd/SuiteSparse_config.o linsys/external/amd/SuiteSparse_config.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o linsys/external/amd/amd_1.o linsys/external/amd/amd_1.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o linsys/external/amd/amd_2.o linsys/external/amd/amd_2.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o linsys/external/amd/amd_aat.o linsys/external/amd/amd_aat.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o linsys/external/amd/amd_control.o linsys/external/amd/amd_control.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o linsys/external/amd/amd_defaults.o linsys/external/amd/amd_defaults.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o linsys/external/amd/amd_dump.o linsys/external/amd/amd_dump.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o linsys/external/amd/amd_global.o linsys/external/amd/amd_global.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o linsys/external/amd/amd_info.o linsys/external/amd/amd_info.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o linsys/external/amd/amd_order.o linsys/external/amd/amd_order.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o linsys/external/amd/amd_post_tree.o linsys/external/amd/amd_post_tree.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o linsys/external/amd/amd_postorder.o linsys/external/amd/amd_postorder.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o linsys/external/amd/amd_preprocess.o linsys/external/amd/amd_preprocess.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o linsys/external/amd/amd_valid.o linsys/external/amd/amd_valid.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o linsys/external/qdldl/qdldl.o linsys/external/qdldl/qdldl.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o linsys/scs_matrix.o linsys/scs_matrix.c gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1 -DGPU_TRANSPOSE_MAT=1 -DUSE_LAPACK -c -o linsys/csparse.o linsys/csparse.c mkdir -p out gcc-ar rv out/libscsdir.a src/scs.o src/util.o src/cones.o src/exp_cone.o src/aa.o src/rw.o src/linalg.o src/ctrlc.o src/scs_version.o src/normalize.o linsys/cpu/direct/private.o linsys/external/amd/SuiteSparse_config.o linsys/external/amd/amd_1.o linsys/external/amd/amd_2.o linsys/external/amd/amd_aat.o linsys/external/amd/amd_control.o linsys/external/amd/amd_defaults.o linsys/external/amd/amd_dump.o linsys/external/amd/amd_global.o linsys/external/amd/amd_info.o linsys/external/amd/amd_order.o linsys/external/amd/amd_post_tree.o linsys/external/amd/amd_postorder.o linsys/external/amd/amd_preprocess.o linsys/external/amd/amd_valid.o linsys/external/qdldl/qdldl.o linsys/scs_matrix.o linsys/csparse.o /usr/bin/ar: creating out/libscsdir.a a - src/scs.o a - src/util.o a - src/cones.o a - src/exp_cone.o a - src/aa.o a - src/rw.o a - src/linalg.o a - src/ctrlc.o a - src/scs_version.o a - src/normalize.o a - linsys/cpu/direct/private.o a - linsys/external/amd/SuiteSparse_config.o a - linsys/external/amd/amd_1.o a - linsys/external/amd/amd_2.o a - linsys/external/amd/amd_aat.o a - linsys/external/amd/amd_control.o a - linsys/external/amd/amd_defaults.o a - linsys/external/amd/amd_dump.o a - linsys/external/amd/amd_global.o a - linsys/external/amd/amd_info.o a - linsys/external/amd/amd_order.o a - linsys/external/amd/amd_post_tree.o a - linsys/external/amd/amd_postorder.o a - linsys/external/amd/amd_preprocess.o a - linsys/external/amd/amd_valid.o a - linsys/external/qdldl/qdldl.o a - linsys/scs_matrix.o a - linsys/csparse.o gcc-ranlib out/libscsdir.a make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/scs/src/scs' gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I./scs/include -DUSE_LAPACK -DCOPYAMATRIX -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c scsr.c -o scsr.o gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o scs.so init.o scsr.o -Lscs/out -lscsdir -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/scs/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/scs/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/scs/src' installing to /data/gannet/ripley/R/packages/tests-devel/scs.Rcheck/00LOCK-scs/00new/scs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scs)