* installing *source* package ‘scanstatistics’ ... ** package ‘scanstatistics’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (GCC) 13.2.0’ using C++11 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/scanstatistics/src' g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c probability_functions.cpp -o probability_functions.o g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c scan_bayes_negbin.cpp -o scan_bayes_negbin.o g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c scan_eb_negbin.cpp -o scan_eb_negbin.o probability_functions.cpp: In function 'double poisson_loglihood(const arma::uvec&, const arma::vec&, double)': probability_functions.cpp:33:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare] 33 | for (int i = 0; i < y.n_elem; ++i) { | ~~^~~~~~~~~~ probability_functions.cpp: In function 'double zip_loglihood(const arma::uvec&, const arma::vec&, const arma::vec&, double)': probability_functions.cpp:86:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare] 86 | for (int i = 0; i < y.n_elem; ++i) { | ~~^~~~~~~~~~ g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c scan_eb_poisson.cpp -o scan_eb_poisson.o g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c scan_eb_zip.cpp -o scan_eb_zip.o g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c scan_pb_perm.cpp -o scan_pb_perm.o g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c scan_pb_poisson.cpp -o scan_pb_poisson.o g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c scan_utility.cpp -o scan_utility.o In file included from scan_eb_zip.cpp:2: EBZIPscan.h: In member function 'virtual void EBZIPscan::calculate(arma::uword, arma::uword, arma::uword, const arma::uvec&, const arma::uvec&)': EBZIPscan.h:132:17: warning: 'loglik_new' may be used uninitialized [-Wmaybe-uninitialized] 132 | (this->*store)(storage_index, loglik_new - loglik_null, q_hat, n_iterations, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | zone_nr + 1, duration + 1); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ EBZIPscan.h:106:10: note: 'loglik_new' was declared here 106 | double loglik_new; | ^~~~~~~~~~ scan_utility.cpp: In function 'arma::uvec shuffle_time_counts(const arma::uvec&)': scan_utility.cpp:69:42: warning: comparison of integer expressions of different signedness: 'arma::sword' {aka 'int'} and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare] 69 | for (arma::uword i = res.n_elem - 1; k < res.n_elem; --i, ++k) { | ~~^~~~~~~~~~~~ g++-13 -std=gnu++11 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o scanstatistics.so RcppExports.o probability_functions.o scan_bayes_negbin.o scan_eb_negbin.o scan_eb_poisson.o scan_eb_zip.o scan_pb_perm.o scan_pb_poisson.o scan_utility.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/scanstatistics/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/scanstatistics/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/scanstatistics/src' installing to /data/gannet/ripley/R/packages/tests-devel/scanstatistics.Rcheck/00LOCK-scanstatistics/00new/scanstatistics/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scanstatistics)