* installing *source* package ‘rxode2parse’ ... ** package ‘rxode2parse’ successfully unpacked and MD5 sums checked ** using staged installation --------[begin src/Makevars]-------- # -*- mode: makefile-gmake -*- BH=/data/gannet/ripley/R/test-dev/BH/include RCPP=/data/gannet/ripley/R/test-dev/Rcpp/include EG=/data/gannet/ripley/R/test-dev/RcppEigen/include SH=-isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' CXX_STD = CXX17 ################################################################################ ## Package library flags. PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(SHLIB_OPENMP_CXXFLAGS) -L'/data/gannet/ripley/R/test-dev/RcppParallel/lib/' -Wl,-rpath,'/data/gannet/ripley/R/test-dev/RcppParallel/lib/' -ltbb -ltbbmalloc # Release options PKG_CFLAGS = -D_isrxode2parse_ PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"$(BH)" -isystem"$(EG)" $(SH) -isystem"$(RCPP)" --------[end src/Makevars]-------- --------[begin R/RxODE_md5.R]-------- rxode2parse.md5 <- "c18ff1a2f151e2d8b856bbe21daf2be7" --------[end R/RxODE_md5.R]-------- ** libs using C compiler: ‘gcc-13 (GCC) 13.2.0’ using C++ compiler: ‘g++-13 (GCC) 13.2.0’ using C++17 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/rxode2parse/src' g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I/usr/local/include -fopenmp -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I/usr/local/include -D_isrxode2parse_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c codegen.c -o codegen.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I/usr/local/include -fopenmp -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c etTran.cpp -o etTran.o etTran.cpp: In function 'Rcpp::List etTransParse(Rcpp::List, Rcpp::List, bool, bool, bool, bool, Rcpp::Nullable >, Rcpp::CharacterVector, bool, bool, bool)': etTran.cpp:2274:32: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2274 | id.size() > (idxOut = idxOutput[iCur]) && | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ etTran.cpp:2277:38: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2277 | idxInput.size() > idxOut && | ~~~~~~~~~~~~~~~~^~~~~~~~ etTran.cpp:2285:39: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2285 | idxOutput.size() < iCur+1 && | ~~~~~~~~~~~~~~~~~^~~~~~~~ etTran.cpp:2286:32: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2286 | id.size() > (idxOut = idxOutput[iCur+1]) && | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ etTran.cpp:2289:38: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2289 | idxInput.size() > idxOut && | ~~~~~~~~~~~~~~~~^~~~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I/usr/local/include -fopenmp -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fast_factor.cpp -o fast_factor.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I/usr/local/include -D_isrxode2parse_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c genModelVars.c -o genModelVars.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I/usr/local/include -D_isrxode2parse_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c getOption.c -o getOption.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I/usr/local/include -D_isrxode2parse_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I/usr/local/include -D_isrxode2parse_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lincmt.c -o lincmt.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I/usr/local/include -fopenmp -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c lincmtB.cpp -o lincmtB.o In file included from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/cov_exp_quad.hpp:7, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun.hpp:41, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev.hpp:10, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math.hpp:19, from lincmtB.cpp:108: /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/gp_exp_quad_cov.hpp: In lambda function: /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/gp_exp_quad_cov.hpp:85:40: warning: comparison of integer expressions of different signedness: 'Eigen::Index' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 85 | for (Eigen::Index pos = 0; pos < l_tri_size; pos++) { | ~~~~^~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor.hpp:13, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun.hpp:201: /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function 'void stan::math::internal::combination(std::vector&, const int&, const int&, const int&)': /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:73:29: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 73 | for (std::size_t i = 0; i < p - 1; i++) { | ~~^~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:79:16: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'const int' [-Wsign-compare] 79 | } while (k < x); | ~~^~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function 'void stan::math::internal::combos(const int&, const double&, const int&, std::vector > >&)': /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:102:29: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 102 | for (std::size_t i = 1; i != choose_dimk + 1; i++) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:105:31: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'const int' [-Wsign-compare] 105 | for (std::size_t j = 0; j != k; j++) { | ~~^~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function 'void stan::math::internal::increment(std::vector&, const int&, const double&, const std::vector&, std::vector >&)': /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:126:31: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'const int' [-Wsign-compare] 126 | for (std::size_t j = 0; j != k; j++) { | ~~^~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:132:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 132 | while ((first_zero < index.size()) && index[first_zero]) { | ~~~~~~~~~~~^~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:135:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 135 | if (first_zero == index.size()) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:143:31: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 143 | for (std::size_t i = 0; i != first_zero + 1; i++) { | ~~^~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function 'void stan::math::internal::signcombos(const int&, const double&, const int&, std::vector > >&)': /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:168:29: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 168 | for (std::size_t i = 1; i != choose_dimk + 1; i++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/von_mises_lccdf.hpp:5, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/von_mises_ccdf_log.hpp:4, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob.hpp:356, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim.hpp:16, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev.hpp:14: /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp: In function 'stan::return_type_t stan::math::von_mises_cdf(const T_x&, const T_mu&, const T_k&)': /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:194: note: '-Wmisleading-indentation' is disabled from this point onwards, since column-tracking was disabled due to the size of the code/headers 194 | if (cdf_n < 0.0) | /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:194: note: adding '-flarge-source-files' will allow for more column-tracking support, at the expense of compilation time and memory In file included from lincmtB.cpp:187: ../inst/include/rxode2parseGetTime.h: In function 'int handleInfusionStartRm(int*, int*, double*, int*, rx_solve*, rx_solving_options*, rx_solving_options_ind*)': ../inst/include/rxode2parseGetTime.h:223: warning: unused variable 'curEvid' [-Wunused-variable] 223 | int curEvid = getEvid(ind, ind->idose[*endIdx+1]); | In file included from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:5, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_2F1_converges.hpp:5, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err.hpp:4, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/profiling.hpp:9, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core.hpp:53, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev.hpp:8: /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of 'void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]': /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from 'void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:35:15: required from 'stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28: required from 'auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector >; Tb = std::vector >; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from 'auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:37: required from here /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'Eigen::EigenBase >::Index' {aka 'long int'} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of 'void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]': /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from 'void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:39:16: required from 'stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28: required from 'auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector >; Tb = std::vector >; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from 'auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:37: required from here /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'Eigen::EigenBase >::Index' {aka 'long int'} [-Wsign-compare] /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of 'void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]': /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from 'void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:35:15: required from 'stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from 'stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from 'TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from 'auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'Eigen::EigenBase >::Index' {aka 'long int'} [-Wsign-compare] /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of 'void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]': /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from 'void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:36:15: required from 'stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from 'stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from 'TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from 'auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'Eigen::EigenBase >::Index' {aka 'long int'} [-Wsign-compare] /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of 'void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]': /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from 'void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:39:16: required from 'stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from 'stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from 'TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from 'auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'Eigen::EigenBase >::Index' {aka 'long int'} [-Wsign-compare] /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of 'void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* = 0]': /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from 'void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:40:16: required from 'stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from 'stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from 'TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from 'auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]' /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'Eigen::EigenBase >::Index' {aka 'long int'} [-Wsign-compare] In function 'double handleInfusionItem(int, rx_solve*, rx_solving_options*, rx_solving_options_ind*)', inlined from 'double getTime__(int, rx_solving_options_ind*, int)' at ../inst/include/rxode2parseGetTime.h:381: ../inst/include/rxode2parseGetTime.h:314: warning: 'infBidx' may be used uninitialized [-Wmaybe-uninitialized] 314 | if (infBidx == -1) return 0.0; | ../inst/include/rxode2parseGetTime.h: In function 'double getTime__(int, rx_solving_options_ind*, int)': ../inst/include/rxode2parseGetTime.h:312: note: 'infBidx' was declared here 312 | int infBidx; | In file included from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_division.hpp:13, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core.hpp:29: In constructor 'stan::math::internal::multiply_vd_vari::multiply_vd_vari(stan::math::vari*, double)', inlined from 'stan::math::var_value& stan::math::var_value::type>::value, void>::type>::operator*=(T) [with T = double]' at /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_multiply_equal.hpp:24:9, inlined from 'stan::math::var_value& stan::math::var_value::type>::value, void>::type>::operator*=(T) [with T = double]' at /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_multiply_equal.hpp:19:22, inlined from 'Eigen::Matrix stan::math::genericCmtInterface(Eigen::Matrix&, const Eigen::Matrix&, double, int, int, int, int, int, int, rx_solving_options_ind*, rx_solve*, const Eigen::Matrix&, const Eigen::Matrix&) [with T = var_value]' at lincmtB.cpp:2517, inlined from 'Eigen::Matrix stan::math::linCmtFun::operator()(Eigen::Matrix&) const [with T = stan::math::var_value]' at lincmtB.cpp:2589, inlined from 'void stan::math::jacobian(const F&, const Eigen::Matrix&, Eigen::Matrix&, Eigen::Matrix&) [with F = linCmtFun]' at /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/functor/jacobian.hpp:23:27: /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:34:75: warning: 'amt' may be used uninitialized [-Wmaybe-uninitialized] 34 | multiply_vd_vari(vari* avi, double b) : op_vd_vari(avi->val_ * b, avi, b) {} | ^ lincmtB.cpp: In function 'void stan::math::jacobian(const F&, const Eigen::Matrix&, Eigen::Matrix&, Eigen::Matrix&) [with F = linCmtFun]': lincmtB.cpp:2266: note: 'amt' was declared here 2266 | double amt; | gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I/usr/local/include -D_isrxode2parse_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c parseLinCmt.c -o parseLinCmt.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I/usr/local/include -D_isrxode2parse_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c print_node.c -o print_node.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I/usr/local/include -fopenmp -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c qs.cpp -o qs.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I/usr/local/include -D_isrxode2parse_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sbuf.c -o sbuf.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I/usr/local/include -D_isrxode2parse_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c strncmpi.c -o strncmpi.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I/usr/local/include -D_isrxode2parse_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c tran.c -o tran.o In file included from parseFuns.h:131, from tran.c:140: parseFunsDosing.h: In function 'handleFunctionTad': parseFunsDosing.h:82:61: warning: value computed is not used [-Wunused-value] 82 | handleFunctionTadEmptyCcode(tf, v2) || | ^~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I/usr/local/include -fopenmp -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c udf.cpp -o udf.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I/usr/local/include -D_isrxode2parse_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c utilc.c -o utilc.o g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o rxode2parse.so RcppExports.o codegen.o etTran.o fast_factor.o genModelVars.o getOption.o init.o lincmt.o lincmtB.o parseLinCmt.o print_node.o qs.o sbuf.o strncmpi.o tran.o udf.o utilc.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/data/gannet/ripley/R/test-dev/RcppParallel/lib/ -Wl,-rpath,/data/gannet/ripley/R/test-dev/RcppParallel/lib/ -ltbb -ltbbmalloc make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/rxode2parse/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/rxode2parse/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/rxode2parse/src' installing to /data/gannet/ripley/R/packages/tests-devel/rxode2parse.Rcheck/00LOCK-rxode2parse/00new/rxode2parse/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rxode2parse)