* installing *source* package ‘robCompositions’ ...
** package ‘robCompositions’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/robCompositions/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/data/gannet/ripley/R/R-devel/library/Rcpp/include -I/data/gannet/ripley/R/R-devel/library/RcppEigen/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c bspline.cpp -o bspline.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/data/gannet/ripley/R/R-devel/library/Rcpp/include -I/data/gannet/ripley/R/R-devel/library/RcppEigen/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c classData.cpp -o classData.o
bspline.cpp: In function 'void bspline::basisfun(unsigned int, double, int, const std::vector<double>&, Eigen::ArrayXd&)':
bspline.cpp:87:14: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
87 | if(i == p && t == U[i]){
| ~~^~~~
bspline.cpp:95:44: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
95 | for (unsigned int j = 1; j <= p; j++) {
| ~~^~~~
bspline.cpp:106:44: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
106 | for (unsigned int k = 0; k <= p; k++) {
| ~~^~~~
classData.cpp: In member function 'void dataManager::antitData(Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>)':
classData.cpp:71:17: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
71 | for(int i=1; i<x_len-1;i++){
| ~^~~~~~~~
classData.cpp: In member function 'void dataManager::plotData(const densityEstimator&, long unsigned int, Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>)':
classData.cpp:110:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
110 | for (int i = 0; i < grid.size(); ++i)
| ~~^~~~~~~~~~~~~
classData.cpp: In member function 'void dataManager::plotData_Clr(const densityEstimator&, long unsigned int, Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>)':
classData.cpp:140:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
140 | for (int i = 0; i < grid.size(); ++i) {
| ~~^~~~~~~~~~~~~
classData.cpp: In member function 'long double dataManager::compute_fvalue(Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::ArrayXd)':
classData.cpp:163:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
163 | for (int i = 0; i < n; ++i) {
| ~~^~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/data/gannet/ripley/R/R-devel/library/Rcpp/include -I/data/gannet/ripley/R/R-devel/library/RcppEigen/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c cuore.cpp -o cuore.o
cuore.cpp:116: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
116 | #pragma omp parallel private(obj) firstprivate(dens)// default(shared)
|
cuore.cpp:118: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
118 | #pragma omp for
|
cuore.cpp:131: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
131 | #pragma omp critical
|
cuore.cpp:242: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
242 | #pragma omp parallel private(obj) firstprivate(dens)// default(shared)
|
cuore.cpp:249: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
249 | #pragma omp for
|
cuore.cpp: In function 'SEXPREC* smoothingSplinesValidation_(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
cuore.cpp:235:7: warning: unused variable 'barWidth' [-Wunused-variable]
235 | int barWidth = 70; // for bar progress plot
| ^~~~~~~~
cuore.cpp:236:7: warning: unused variable 'count' [-Wunused-variable]
236 | int count = 0;
| ^~~~~
cuore.cpp:237:7: warning: unused variable 'pos' [-Wunused-variable]
237 | int pos = 0;
| ^~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/data/gannet/ripley/R/R-devel/library/Rcpp/include -I/data/gannet/ripley/R/R-devel/library/RcppEigen/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c density_estimation.cpp -o density_estimation.o
density_estimation.cpp: In member function 'void parametersManager::readXcp(const double*, const unsigned int&, const int&)':
density_estimation.cpp:54:9: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'const int' [-Wsign-compare]
54 | if(i!=cancel) xcp.push_back(inputXcp[i]);
| ~^~~~~~~~
density_estimation.cpp: In member function 'void densityEstimator::set_weights(const Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>&)':
density_estimation.cpp:201:26: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'Eigen::Index' {aka 'long int'} [-Wsign-compare]
201 | for(std::size_t i=0; i < row.cols(); i++)
| ~~^~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/data/gannet/ripley/R/R-devel/library/Rcpp/include -I/data/gannet/ripley/R/R-devel/library/RcppEigen/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gauss_points_weights.cpp -o gauss_points_weights.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/data/gannet/ripley/R/R-devel/library/Rcpp/include -I/data/gannet/ripley/R/R-devel/library/RcppEigen/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c robCompositions.c -o robCompositions.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/data/gannet/ripley/R/R-devel/library/Rcpp/include -I/data/gannet/ripley/R/R-devel/library/RcppEigen/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c robCompositions_init.c -o robCompositions_init.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/data/gannet/ripley/R/R-devel/library/Rcpp/include -I/data/gannet/ripley/R/R-devel/library/RcppEigen/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sandia_rules.cpp -o sandia_rules.o
sandia_rules.cpp: In function 'void webbur::hermite_genz_keister_lookup_weights(int, double*)':
sandia_rules.cpp:6030:17: warning: unused variable 'sqrtpi' [-Wunused-variable]
6030 | static double sqrtpi = 1.7724538509055159;
| ^~~~~~
sandia_rules.cpp: In function 'void webbur::hermite_interpolant_rule(int, double, double, double*, double*)':
sandia_rules.cpp:7009:7: warning: unused variable 'j' [-Wunused-variable]
7009 | int j;
| ^
sandia_rules.cpp: In function 'void webbur::laguerre_ss_compute(int, double*, double*)':
sandia_rules.cpp:11501:10: warning: variable 'cc' set but not used [-Wunused-but-set-variable]
11501 | double cc;
| ^~
sandia_rules.cpp: In function 'double* webbur::legendre_zeros(int)':
sandia_rules.cpp:13834:10: warning: variable 'fx' set but not used [-Wunused-but-set-variable]
13834 | double fx;
| ^~
sandia_rules.cpp: In function 'void webbur::nco_compute_weights(int, double*)':
sandia_rules.cpp:16460:7: warning: unused variable 'i' [-Wunused-variable]
16460 | int i;
| ^
sandia_rules.cpp: In function 'void webbur::ncoh_compute_weights(int, double*)':
sandia_rules.cpp:16556:7: warning: unused variable 'i' [-Wunused-variable]
16556 | int i;
| ^
sandia_rules.cpp: In function 'void webbur::point_radial_tol_unique_count_inc1(int, int, double*, double, int*, double*, double*, int*, bool*, int*)':
sandia_rules.cpp:19283:7: warning: unused variable 'j' [-Wunused-variable]
19283 | int j;
| ^
sandia_rules.cpp: In function 'void webbur::point_radial_tol_unique_count_inc2(int, int, double*, int, double*, double, double*, double*, int*, bool*, int*)':
sandia_rules.cpp:19444:7: warning: unused variable 'j' [-Wunused-variable]
19444 | int j;
| ^
sandia_rules.cpp:19449:7: warning: unused variable 'k1' [-Wunused-variable]
19449 | int k1;
| ^~
sandia_rules.cpp: In function 'void webbur::point_radial_tol_unique_index_inc1(int, int, double*, double, int*, double*, double*, int*, bool*, int*, int*, int*)':
sandia_rules.cpp:19812:7: warning: unused variable 'j' [-Wunused-variable]
19812 | int j;
| ^
sandia_rules.cpp: In function 'void webbur::point_radial_tol_unique_index_inc2(int, int, double*, int, double*, double, double*, double*, int*, bool*, int, int*, int*, double*, int*, bool*, int*, int*, int*)':
sandia_rules.cpp:19998:7: warning: unused variable 'j' [-Wunused-variable]
19998 | int j;
| ^
sandia_rules.cpp:20003:7: warning: unused variable 'k1' [-Wunused-variable]
20003 | int k1;
| ^~
sandia_rules.cpp: In function 'void webbur::timestamp()':
sandia_rules.cpp:25625:10: warning: variable 'len' set but not used [-Wunused-but-set-variable]
25625 | size_t len;
| ^~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/data/gannet/ripley/R/R-devel/library/Rcpp/include -I/data/gannet/ripley/R/R-devel/library/RcppEigen/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c zeros.cpp -o zeros.o
sandia_rules.cpp: In function 'void webbur::imtqlx(int, double*, double*, double*)':
sandia_rules.cpp:9371:7: warning: 'm' may be used uninitialized [-Wmaybe-uninitialized]
9371 | int m;
| ^
zeros.cpp: In function 'void BM(std::vector<double>&, const Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false>&, const double&, bool)':
zeros.cpp:112:28: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'Eigen::EigenBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >::Index' {aka 'long int'} [-Wsign-compare]
112 | for(std::size_t i = 0; i < data.size(); i++)
| ~~^~~~~~~~~~~~~
zeros.cpp:124:28: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'Eigen::EigenBase<Eigen::Block<Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >, 1, -1, false> >::Index' {aka 'long int'} [-Wsign-compare]
124 | for(std::size_t i = 0; i < data.size(); i++)
| ~~^~~~~~~~~~~~~
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o robCompositions.so bspline.o classData.o cuore.o density_estimation.o gauss_points_weights.o robCompositions.o robCompositions_init.o sandia_rules.o zeros.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/robCompositions/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/robCompositions/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/robCompositions/src'
installing to /data/gannet/ripley/R/packages/tests-devel/robCompositions.Rcheck/00LOCK-robCompositions/00new/robCompositions/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (robCompositions)