* installing *source* package ‘raybevel’ ...
** package ‘raybevel’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (GCC) 14.1.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/raybevel/src'
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/progress/include' -I'/data/gannet/ripley/R/test-dev/RcppThread/include' -I/usr/local/include   -DCGAL_NO_GMP=1 -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/progress/include' -I'/data/gannet/ripley/R/test-dev/RcppThread/include' -I/usr/local/include   -DCGAL_NO_GMP=1 -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c convert_ss_to_polygons_rcpp.cpp -o convert_ss_to_polygons_rcpp.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/progress/include' -I'/data/gannet/ripley/R/test-dev/RcppThread/include' -I/usr/local/include   -DCGAL_NO_GMP=1 -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c generate_offset_links_nodes_rcpp.cpp -o generate_offset_links_nodes_rcpp.o
generate_offset_links_nodes_rcpp.cpp: In function 'Rcpp::List generate_offset_links_nodes_rcpp(Rcpp::DataFrame, Rcpp::DataFrame, Rcpp::NumericVector, bool, bool)':
generate_offset_links_nodes_rcpp.cpp:148:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Node>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  148 |   for(int ii = 0; ii < nodes.size(); ii++) {
      |                   ~~~^~~~~~~~~~~~~~
generate_offset_links_nodes_rcpp.cpp:165:25: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'R_xlen_t' {aka 'long int'} [-Wsign-compare]
  165 |   for(size_t ii = 0; ii < offsets.size(); ++ii) {
      |                      ~~~^~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/progress/include' -I'/data/gannet/ripley/R/test-dev/RcppThread/include' -I/usr/local/include   -DCGAL_NO_GMP=1 -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c math.cpp -o math.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/progress/include' -I'/data/gannet/ripley/R/test-dev/RcppThread/include' -I/usr/local/include   -DCGAL_NO_GMP=1 -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rayskeleton.cpp -o rayskeleton.o
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/cstdfloat.hpp:27,
                 from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/float128_functions.hpp:15,
                 from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/fpclassify.hpp:13,
                 from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/default_ops.hpp:15,
                 from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/generic_interconvert.hpp:12,
                 from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/number.hpp:12,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/boost_mp.h:42,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Number_types/internal/Exact_type_selector.h:27,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Exact_kernel_selector.h:26,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Filtered_kernel.h:22,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Exact_predicates_inexact_constructions_kernel.h:21,
                 from rayskeleton.cpp:4:
/data/gannet/ripley/R/test-dev/BH/include/boost/math/cstdfloat/cstdfloat_cmath.hpp:714:16: warning: non-standard suffix on floating constant [-Wpedantic]
  714 |                else if (x == BOOST_FLOAT128_C(0.0))
      |                ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/math/cstdfloat/cstdfloat_cmath.hpp:717:16: warning: non-standard suffix on floating constant [-Wpedantic]
  717 |                if (::BOOST_CSTDFLOAT_FLOAT128_FABS(x) < BOOST_CSTDFLOAT_FLOAT128_MIN)
      |                ^~
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:18,
                 from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/property_map.hpp:598,
                 from /data/gannet/ripley/R/test-dev/BH/include/boost/graph/properties.hpp:19,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/boost/graph/graph_traits_HalfedgeDS.h:26,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/boost/graph/graph_traits_HalfedgeDS_default.h:15,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/HalfedgeDS_default.h:23,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Straight_skeleton_2.h:18,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/create_straight_skeleton_2.h:18,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/create_straight_skeleton_from_polygon_with_holes_2.h:17,
                 from rayskeleton.cpp:8:
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.1.0/bits/std_thread.h:43,
                 from /usr/local/gcc14/include/c++/14.1.0/thread:49,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/config.h:425,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/basic.h:21,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Cartesian/Cartesian_base.h:20,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Simple_cartesian.h:20,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Exact_predicates_inexact_constructions_kernel.h:20:
/usr/local/gcc14/include/c++/14.1.0/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
/usr/local/gcc14/include/c++/14.1.0/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  508 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
/usr/local/gcc14/include/c++/14.1.0/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  521 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
/usr/local/gcc14/include/c++/14.1.0/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  604 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
/usr/local/gcc14/include/c++/14.1.0/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  613 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
/usr/local/gcc14/include/c++/14.1.0/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)':
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  615 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
/usr/local/gcc14/include/c++/14.1.0/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/scoped_ptr.hpp:13,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Straight_skeleton_builder_2.h:27,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/create_straight_skeleton_2.h:19:
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/scoped_ptr.hpp:75:31: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   75 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
/usr/local/gcc14/include/c++/14.1.0/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o raybevel.so RcppExports.o convert_ss_to_polygons_rcpp.o generate_offset_links_nodes_rcpp.o math.o rayskeleton.o -latomic -lpthread
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/raybevel/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/raybevel/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/raybevel/src'
installing to /data/gannet/ripley/R/packages/tests-devel/raybevel.Rcheck/00LOCK-raybevel/00new/raybevel/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (raybevel)