- using R Under development (unstable) (2022-06-17 r82501)
- using platform: x86_64-pc-linux-gnu (64-bit)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘qat/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘qat’ version ‘0.74’
- package encoding: latin1
- checking package namespace information ... OK
- checking package dependencies ... WARNING
Requires (indirectly) orphaned package: ‘gtools’
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘qat’ can be installed ... [24s/33s] OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [48s/61s] OK
- checking Rd files ... NOTE
checkRd: (-1) qat_add_algorithm.Rd:13: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) qat_add_all_algorithms.Rd:13: Escaped LaTeX specials: \_ \_ \_
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checkRd: (-1) qat_add_description.Rd:13: Escaped LaTeX specials: \_ \_ \_
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checkRd: (-1) qat_analyse_histogram_test_1d.Rd:33: Escaped LaTeX specials: \_ \_
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checkRd: (-1) qat_analyse_roc_rule_dynamic_2d.Rd:29: Escaped LaTeX specials: \_ \_
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checkRd: (-1) qat_analyse_set_nans_below_2d.Rd:16: Escaped LaTeX specials: \_
checkRd: (-1) qat_call_block_distribution.Rd:6: Escaped LaTeX specials: \_ \_ \_ \_ \_
checkRd: (-1) qat_call_block_distribution.Rd:30: Escaped LaTeX specials: \_ \_ \_ \_ \_
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checkRd: (-1) qat_call_distribution.Rd:6: Escaped LaTeX specials: \_ \_ \_ \_
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checkRd: (-1) qat_call_histogram_test.Rd:6: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_
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checkRd: (-1) qat_call_lim_rule.Rd:6: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) qat_call_lim_rule.Rd:30: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) qat_call_noc_rule.Rd:6: Escaped LaTeX specials: \_ \_ \_ \_ \_
checkRd: (-1) qat_call_noc_rule.Rd:29: Escaped LaTeX specials: \_ \_ \_ \_ \_
checkRd: (-1) qat_call_plot_block_distribution.Rd:6: Escaped LaTeX specials: \_ \_ \_ \_
checkRd: (-1) qat_call_plot_block_distribution.Rd:15: Escaped LaTeX specials: \_ \_ \_ \_
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checkRd: (-1) qat_call_plot_boot_distribution.Rd:6: Escaped LaTeX specials: \_ \_ \_ \_
checkRd: (-1) qat_call_plot_boot_distribution.Rd:14: Escaped LaTeX specials: \_ \_ \_ \_
checkRd: (-1) qat_call_plot_boot_distribution.Rd:26: Escaped LaTeX specials: \_ \_ \_ \_ \_
checkRd: (-1) qat_call_plot_distribution.Rd:6: Escaped LaTeX specials: \_ \_ \_
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checkRd: (-1) qat_call_plot_distribution.Rd:27: Escaped LaTeX specials: \_ \_ \_ \_
checkRd: (-1) qat_call_plot_histogram_test.Rd:6: Escaped LaTeX specials: \_ \_ \_ \_ \_
checkRd: (-1) qat_call_plot_histogram_test.Rd:14: Escaped LaTeX specials: \_ \_ \_ \_ \_
checkRd: (-1) qat_call_plot_histogram_test.Rd:26: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_
checkRd: (-1) qat_call_plot_lim_rule.Rd:6: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) qat_call_plot_lim_rule.Rd:15: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) qat_call_plot_lim_rule.Rd:27: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) qat_call_plot_noc_rule.Rd:6: Escaped LaTeX specials: \_ \_ \_ \_
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checkRd: (-1) qat_call_plot_roc_rule.Rd:6: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
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checkRd: (-1) qat_call_plot_trimmed_distribution.Rd:6: Escaped LaTeX specials: \_ \_ \_ \_
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checkRd: (-1) qat_call_plot_trimmed_distribution.Rd:27: Escaped LaTeX specials: \_ \_ \_ \_ \_
checkRd: (-1) qat_call_roc_rule.Rd:6: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) qat_call_roc_rule.Rd:30: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) qat_call_save_block_distribution.Rd:5: Escaped LaTeX specials: \_ \_ \_ \_
checkRd: (-1) qat_call_save_block_distribution.Rd:30: Escaped LaTeX specials: \_ \_ \_ \_
checkRd: (-1) qat_call_save_boot_distribution.Rd:5: Escaped LaTeX specials: \_ \_ \_ \_
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checkRd: (-1) qat_call_save_histogram_test.Rd:6: Escaped LaTeX specials: \_ \_ \_
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checkRd: (-1) qat_call_save_lim_rule.Rd:5: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) qat_call_save_lim_rule.Rd:29: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
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checkRd: (-1) qat_save_histogram_test.Rd:6: Escaped LaTeX specials: \_ \_ \_ \_ \_
checkRd: (-1) qat_save_lim_rule_dynamic_1d.Rd:5: Escaped LaTeX specials: \_ \_ \_ \_ \_
checkRd: (-1) qat_save_lim_rule_dynamic_2d.Rd:5: Escaped LaTeX specials: \_ \_ \_ \_ \_
checkRd: (-1) qat_save_lim_rule_sigma_1d.Rd:5: Escaped LaTeX specials: \_ \_ \_ \_ \_
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checkRd: (-1) qat_save_lim_rule_static_1d.Rd:5: Escaped LaTeX specials: \_ \_ \_ \_ \_
checkRd: (-1) qat_save_lim_rule_static_2d.Rd:5: Escaped LaTeX specials: \_ \_ \_ \_ \_
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checkRd: (-1) qat_save_result_ncdf.Rd:43: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) qat_save_roc_rule_dynamic_1d.Rd:5: Escaped LaTeX specials: \_ \_ \_ \_ \_
checkRd: (-1) qat_save_roc_rule_dynamic_2d.Rd:5: Escaped LaTeX specials: \_ \_ \_ \_ \_
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checkRd: (-1) qat_save_set_addup_1d.Rd:8: Escaped LaTeX specials: \_ \_ \_ \_
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checkRd: (-1) qat_save_set_nans_below_1d.Rd:8: Escaped LaTeX specials: \_ \_ \_ \_ \_
checkRd: (-1) qat_save_slide_distribution_1d.Rd:5: Escaped LaTeX specials: \_ \_ \_ \_
checkRd: (-1) qat_save_slide_distribution_2d.Rd:5: Escaped LaTeX specials: \_ \_ \_ \_
checkRd: (-1) qat_save_trimmed_distribution_1d.Rd:5: Escaped LaTeX specials: \_ \_ \_ \_
checkRd: (-1) qat_save_trimmed_distribution_2d.Rd:5: Escaped LaTeX specials: \_ \_ \_ \_
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [102s/125s] OK
- checking PDF version of manual ... OK
- checking for non-standard things in the check directory ... NOTE
Found the following files/directories:
‘exampleplot_1_blockdist_1.png’ ‘exampleplot_1_blockdist_2.png’
‘exampleplot_1_blockdist_3.png’ ‘exampleplot_1_bootdist.png’
‘exampleplot_1_dist.png’ ‘exampleplot_1_histogramtest_EMD.png’
‘exampleplot_1_roc_dynamic.png’ ‘exampleplot_1_slidedist_1.png’
‘exampleplot_1_slidedist_2.png’ ‘exampleplot_1_slidedist_3.png’
‘exampleplot_1_trimmeddist.png’ ‘exampleplot_blockdist_1.png’
‘exampleplot_blockdist_2.png’ ‘exampleplot_blockdist_3.png’
‘exampleplot_bootdist.png’ ‘exampleplot_dist.png’
‘exampleplot_lim_dyn.png’ ‘exampleplot_lim_sig.png’
‘exampleplot_lim_sta.png’ ‘exampleplot_noc.png’
‘exampleplot_roc_dyn.png’ ‘exampleplot_roc_sta.png’
‘exampleplot_slidedist_1.png’ ‘exampleplot_slidedist_2.png’
‘exampleplot_slidedist_3.png’ ‘exampleplot_trimmeddist.png’
‘myworkflow_result.xml’ ‘test_2_roc_dynamic.png’ ‘test_4_dist.png’
‘test_5_blockdist_1.png’ ‘test_5_blockdist_2.png’
‘test_5_blockdist_3.png’ ‘test_6_slidedist_1.png’
‘test_6_slidedist_2.png’ ‘test_6_slidedist_3.png’
‘test_7_trimmeddist.png’ ‘test_8_bootdist.png’ ‘test_emd_1d.png’
‘test_emd_2d.png’ ‘test_jsd_1d.png’ ‘test_jsd_2d.png’
‘test_kld_1d.png’ ‘test_kld_2d.png’ ‘test_ms_1d.png’ ‘test_ms_2d.png’
‘test_rms_1d.png’ ‘test_rms_2d.png’
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 WARNING, 2 NOTEs